Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2922 and EX28DRAFT_2923 are separated by 235 nucleotides EX28DRAFT_2923 and EX28DRAFT_2924 are separated by 93 nucleotides
EX28DRAFT_2922: EX28DRAFT_2922 - 5-keto 4-deoxyuronate isomerase, at 233,375 to 234,211
_2922
EX28DRAFT_2923: EX28DRAFT_2923 - acetyl-CoA acetyltransferases, at 234,447 to 235,625
_2923
EX28DRAFT_2924: EX28DRAFT_2924 - Transcriptional regulator, at 235,719 to 236,585
_2924
Position (kb) 234
235
236 Strain fitness (log2 ratio) -2
-1
0
1 at 233.447 kb on - strand at 233.447 kb on - strand at 233.833 kb on - strand, within EX28DRAFT_2922 at 233.891 kb on - strand, within EX28DRAFT_2922 at 233.926 kb on - strand, within EX28DRAFT_2922 at 233.926 kb on - strand, within EX28DRAFT_2922 at 234.062 kb on - strand, within EX28DRAFT_2922 at 234.077 kb on - strand, within EX28DRAFT_2922 at 234.108 kb on + strand, within EX28DRAFT_2922 at 234.125 kb on + strand, within EX28DRAFT_2922 at 234.163 kb on + strand at 234.286 kb on + strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.287 kb on - strand at 234.298 kb on - strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.667 kb on + strand, within EX28DRAFT_2923 at 234.743 kb on - strand, within EX28DRAFT_2923 at 234.780 kb on + strand, within EX28DRAFT_2923 at 235.158 kb on - strand, within EX28DRAFT_2923 at 235.162 kb on + strand, within EX28DRAFT_2923 at 235.162 kb on + strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.163 kb on - strand, within EX28DRAFT_2923 at 235.274 kb on + strand, within EX28DRAFT_2923 at 235.275 kb on - strand, within EX28DRAFT_2923 at 235.587 kb on - strand at 235.609 kb on - strand at 235.609 kb on - strand at 235.612 kb on - strand at 235.612 kb on - strand at 235.684 kb on + strand at 235.738 kb on + strand at 235.739 kb on - strand at 235.739 kb on - strand at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.985 kb on - strand, within EX28DRAFT_2924 at 236.071 kb on + strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.103 kb on + strand, within EX28DRAFT_2924 at 236.578 kb on + strand at 236.591 kb on - strand at 236.595 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 233,447 - +0.2 233,447 - -0.3 233,833 - EX28DRAFT_2922 0.55 -0.2 233,891 - EX28DRAFT_2922 0.62 -0.3 233,926 - EX28DRAFT_2922 0.66 +0.7 233,926 - EX28DRAFT_2922 0.66 +0.7 234,062 - EX28DRAFT_2922 0.82 +0.7 234,077 - EX28DRAFT_2922 0.84 -0.7 234,108 + EX28DRAFT_2922 0.88 -0.2 234,125 + EX28DRAFT_2922 0.90 +0.1 234,163 + -0.7 234,286 + -0.2 234,287 - +0.2 234,287 - -0.6 234,287 - -0.8 234,287 - +0.1 234,287 - +0.6 234,298 - +0.2 234,488 + -2.2 234,488 + -0.2 234,488 + +0.2 234,667 + EX28DRAFT_2923 0.19 +0.9 234,743 - EX28DRAFT_2923 0.25 +1.2 234,780 + EX28DRAFT_2923 0.28 -0.1 235,158 - EX28DRAFT_2923 0.60 +0.3 235,162 + EX28DRAFT_2923 0.61 -0.9 235,162 + EX28DRAFT_2923 0.61 -0.1 235,163 - EX28DRAFT_2923 0.61 -0.1 235,163 - EX28DRAFT_2923 0.61 +0.6 235,163 - EX28DRAFT_2923 0.61 +0.2 235,274 + EX28DRAFT_2923 0.70 -0.6 235,275 - EX28DRAFT_2923 0.70 -0.1 235,587 - +0.1 235,609 - +0.5 235,609 - +0.1 235,612 - +1.4 235,612 - -1.1 235,684 + +0.8 235,738 + -1.8 235,739 - +0.4 235,739 - -0.0 235,984 + EX28DRAFT_2924 0.31 +0.1 235,984 + EX28DRAFT_2924 0.31 +1.0 235,985 - EX28DRAFT_2924 0.31 +1.3 236,071 + EX28DRAFT_2924 0.41 -0.2 236,072 - EX28DRAFT_2924 0.41 +1.2 236,072 - EX28DRAFT_2924 0.41 -0.4 236,103 + EX28DRAFT_2924 0.44 -0.3 236,578 + -0.1 236,591 - +0.0 236,595 - +0.5
Or see this region's nucleotide sequence