Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2905 and EX28DRAFT_2906 are separated by 683 nucleotides EX28DRAFT_2906 and EX28DRAFT_2907 are separated by 128 nucleotides EX28DRAFT_2907 and EX28DRAFT_2908 are separated by 131 nucleotides
EX28DRAFT_2905: EX28DRAFT_2905 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 216,222 to 216,752
_2905
EX28DRAFT_2906: EX28DRAFT_2906 - DNA mismatch repair protein MutH, at 217,436 to 218,128
_2906
EX28DRAFT_2907: EX28DRAFT_2907 - Bacterial protein of unknown function (DUF903), at 218,257 to 218,475
_2907
EX28DRAFT_2908: EX28DRAFT_2908 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 218,607 to 219,647
_2908
Position (kb) 217
218
219 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 216.776 kb on - strand at 216.777 kb on + strand at 216.778 kb on - strand at 216.779 kb on + strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.780 kb on - strand at 216.825 kb on + strand at 216.825 kb on + strand at 216.840 kb on + strand at 216.866 kb on - strand at 216.930 kb on + strand at 216.930 kb on + strand at 216.931 kb on - strand at 217.254 kb on + strand at 217.373 kb on + strand at 217.373 kb on + strand at 217.385 kb on - strand at 217.417 kb on + strand at 217.447 kb on + strand at 217.489 kb on - strand at 217.489 kb on - strand at 217.669 kb on - strand, within EX28DRAFT_2906 at 217.726 kb on - strand, within EX28DRAFT_2906 at 217.787 kb on - strand, within EX28DRAFT_2906 at 217.951 kb on + strand, within EX28DRAFT_2906 at 217.974 kb on + strand, within EX28DRAFT_2906 at 217.975 kb on - strand, within EX28DRAFT_2906 at 217.975 kb on - strand, within EX28DRAFT_2906 at 217.975 kb on - strand, within EX28DRAFT_2906 at 217.978 kb on - strand, within EX28DRAFT_2906 at 218.069 kb on + strand at 218.126 kb on + strand at 218.127 kb on - strand at 218.159 kb on + strand at 218.222 kb on + strand at 218.222 kb on + strand at 218.223 kb on - strand at 218.277 kb on - strand at 218.317 kb on - strand, within EX28DRAFT_2907 at 218.327 kb on - strand, within EX28DRAFT_2907 at 218.454 kb on - strand at 218.463 kb on + strand at 218.548 kb on + strand at 218.548 kb on + strand at 218.549 kb on - strand at 218.549 kb on - strand at 218.549 kb on - strand at 218.549 kb on - strand at 218.550 kb on + strand at 218.550 kb on + strand at 218.582 kb on + strand at 218.582 kb on + strand at 218.582 kb on + strand at 218.583 kb on - strand at 218.584 kb on + strand at 218.584 kb on + strand at 218.584 kb on + strand at 218.584 kb on + strand at 218.584 kb on + strand at 218.585 kb on - strand at 218.585 kb on - strand at 218.718 kb on + strand, within EX28DRAFT_2908 at 218.763 kb on + strand, within EX28DRAFT_2908 at 218.763 kb on + strand, within EX28DRAFT_2908 at 218.764 kb on - strand, within EX28DRAFT_2908
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 216,776 - -1.6 216,777 + -2.0 216,778 - -1.0 216,779 + -1.2 216,780 - -2.3 216,780 - -1.8 216,780 - +0.3 216,780 - +0.6 216,825 + +0.5 216,825 + +0.0 216,840 + +0.3 216,866 - +1.4 216,930 + -1.1 216,930 + +0.5 216,931 - -0.1 217,254 + +0.2 217,373 + +0.6 217,373 + +0.4 217,385 - +1.0 217,417 + +0.6 217,447 + +0.8 217,489 - +1.0 217,489 - +0.2 217,669 - EX28DRAFT_2906 0.34 +0.1 217,726 - EX28DRAFT_2906 0.42 +2.8 217,787 - EX28DRAFT_2906 0.51 +0.1 217,951 + EX28DRAFT_2906 0.74 -0.4 217,974 + EX28DRAFT_2906 0.78 +0.2 217,975 - EX28DRAFT_2906 0.78 +0.2 217,975 - EX28DRAFT_2906 0.78 +1.1 217,975 - EX28DRAFT_2906 0.78 -0.1 217,978 - EX28DRAFT_2906 0.78 +0.3 218,069 + +0.1 218,126 + -2.5 218,127 - +0.3 218,159 + -0.8 218,222 + +0.3 218,222 + -1.4 218,223 - +0.5 218,277 - -0.1 218,317 - EX28DRAFT_2907 0.27 +0.2 218,327 - EX28DRAFT_2907 0.32 -1.0 218,454 - -2.0 218,463 + -1.2 218,548 + -0.0 218,548 + -0.0 218,549 - -0.3 218,549 - -0.6 218,549 - +0.3 218,549 - +1.0 218,550 + -0.1 218,550 + +0.2 218,582 + -0.8 218,582 + +0.4 218,582 + -0.1 218,583 - -0.9 218,584 + +0.5 218,584 + -1.2 218,584 + +1.1 218,584 + -0.3 218,584 + -0.3 218,585 - -0.4 218,585 - -1.3 218,718 + EX28DRAFT_2908 0.11 -0.4 218,763 + EX28DRAFT_2908 0.15 -1.0 218,763 + EX28DRAFT_2908 0.15 -0.4 218,764 - EX28DRAFT_2908 0.15 +0.9
Or see this region's nucleotide sequence