Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2892

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2889 and EX28DRAFT_2890 are separated by 208 nucleotidesEX28DRAFT_2890 and EX28DRAFT_2891 are separated by 44 nucleotidesEX28DRAFT_2891 and EX28DRAFT_2892 are separated by 88 nucleotidesEX28DRAFT_2892 and EX28DRAFT_2893 are separated by 212 nucleotides EX28DRAFT_2889: EX28DRAFT_2889 - Membrane-bound lytic murein transglycosylase, at 193,997 to 195,094 _2889 EX28DRAFT_2890: EX28DRAFT_2890 - tRNA, at 195,303 to 195,379 _2890 EX28DRAFT_2891: EX28DRAFT_2891 - tRNA, at 195,424 to 195,500 _2891 EX28DRAFT_2892: EX28DRAFT_2892 - N-acetylmuramoyl-L-alanine amidase, at 195,589 to 196,857 _2892 EX28DRAFT_2893: EX28DRAFT_2893 - N-acetylglutamate synthase (EC 2.3.1.1), at 197,070 to 198,401 _2893 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 194.589 kb on + strand, within EX28DRAFT_2889at 194.602 kb on - strand, within EX28DRAFT_2889at 194.668 kb on + strand, within EX28DRAFT_2889at 194.673 kb on + strand, within EX28DRAFT_2889at 194.674 kb on - strand, within EX28DRAFT_2889at 194.677 kb on + strand, within EX28DRAFT_2889at 194.678 kb on - strand, within EX28DRAFT_2889at 194.730 kb on + strand, within EX28DRAFT_2889at 194.730 kb on + strand, within EX28DRAFT_2889at 194.806 kb on + strand, within EX28DRAFT_2889at 194.806 kb on + strand, within EX28DRAFT_2889at 194.853 kb on + strand, within EX28DRAFT_2889at 194.853 kb on + strand, within EX28DRAFT_2889at 194.854 kb on - strand, within EX28DRAFT_2889at 194.854 kb on - strand, within EX28DRAFT_2889at 194.860 kb on + strand, within EX28DRAFT_2889at 194.874 kb on + strand, within EX28DRAFT_2889at 194.967 kb on - strand, within EX28DRAFT_2889at 195.000 kb on + strandat 195.001 kb on - strandat 195.001 kb on - strandat 195.001 kb on - strandat 195.073 kb on - strandat 195.095 kb on + strandat 195.095 kb on + strandat 195.096 kb on - strandat 195.096 kb on - strandat 195.096 kb on - strandat 195.098 kb on - strandat 195.098 kb on - strandat 195.098 kb on - strandat 195.098 kb on - strandat 195.098 kb on - strandat 195.098 kb on - strandat 195.248 kb on - strandat 195.339 kb on + strand, within EX28DRAFT_2890at 195.397 kb on - strandat 195.502 kb on + strandat 195.503 kb on - strandat 195.517 kb on + strandat 195.690 kb on + strandat 195.691 kb on - strandat 195.792 kb on + strand, within EX28DRAFT_2892at 195.885 kb on + strand, within EX28DRAFT_2892at 195.885 kb on + strand, within EX28DRAFT_2892at 195.885 kb on + strand, within EX28DRAFT_2892at 195.885 kb on + strand, within EX28DRAFT_2892at 195.886 kb on - strand, within EX28DRAFT_2892at 195.886 kb on - strand, within EX28DRAFT_2892at 195.886 kb on - strand, within EX28DRAFT_2892at 196.119 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.149 kb on + strand, within EX28DRAFT_2892at 196.361 kb on + strand, within EX28DRAFT_2892at 196.395 kb on + strand, within EX28DRAFT_2892at 196.440 kb on + strand, within EX28DRAFT_2892at 196.441 kb on - strand, within EX28DRAFT_2892at 196.664 kb on + strand, within EX28DRAFT_2892at 196.665 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.801 kb on + strandat 196.874 kb on - strandat 196.928 kb on + strandat 196.929 kb on - strandat 196.929 kb on - strandat 196.949 kb on - strandat 197.084 kb on + strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.125 kb on - strandat 197.256 kb on + strand, within EX28DRAFT_2893at 197.256 kb on + strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.550 kb on - strand, within EX28DRAFT_2893

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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194,589 + EX28DRAFT_2889 0.54 -0.0
194,602 - EX28DRAFT_2889 0.55 -0.9
194,668 + EX28DRAFT_2889 0.61 -0.6
194,673 + EX28DRAFT_2889 0.62 +1.3
194,674 - EX28DRAFT_2889 0.62 +0.2
194,677 + EX28DRAFT_2889 0.62 -0.5
194,678 - EX28DRAFT_2889 0.62 +1.2
194,730 + EX28DRAFT_2889 0.67 -0.9
194,730 + EX28DRAFT_2889 0.67 +0.4
194,806 + EX28DRAFT_2889 0.74 -0.4
194,806 + EX28DRAFT_2889 0.74 +1.6
194,853 + EX28DRAFT_2889 0.78 -0.6
194,853 + EX28DRAFT_2889 0.78 -0.2
194,854 - EX28DRAFT_2889 0.78 +0.1
194,854 - EX28DRAFT_2889 0.78 +0.1
194,860 + EX28DRAFT_2889 0.79 +0.7
194,874 + EX28DRAFT_2889 0.80 -0.3
194,967 - EX28DRAFT_2889 0.88 -0.9
195,000 + -0.9
195,001 - +0.3
195,001 - +0.5
195,001 - +1.3
195,073 - -1.0
195,095 + +0.2
195,095 + -1.0
195,096 - +1.2
195,096 - -0.6
195,096 - +0.3
195,098 - -0.3
195,098 - -1.2
195,098 - +0.3
195,098 - +0.3
195,098 - +0.3
195,098 - -0.0
195,248 - -3.3
195,339 + EX28DRAFT_2890 0.47 -0.7
195,397 - -3.1
195,502 + -0.0
195,503 - -0.7
195,517 + +0.0
195,690 + +0.1
195,691 - +0.0
195,792 + EX28DRAFT_2892 0.16 +0.2
195,885 + EX28DRAFT_2892 0.23 -0.3
195,885 + EX28DRAFT_2892 0.23 +0.3
195,885 + EX28DRAFT_2892 0.23 -0.9
195,885 + EX28DRAFT_2892 0.23 +2.2
195,886 - EX28DRAFT_2892 0.23 -0.3
195,886 - EX28DRAFT_2892 0.23 +0.5
195,886 - EX28DRAFT_2892 0.23 -0.3
196,119 + EX28DRAFT_2892 0.42 +0.1
196,137 + EX28DRAFT_2892 0.43 +0.3
196,137 + EX28DRAFT_2892 0.43 -0.2
196,140 - EX28DRAFT_2892 0.43 -1.2
196,140 - EX28DRAFT_2892 0.43 -0.9
196,149 + EX28DRAFT_2892 0.44 -0.3
196,361 + EX28DRAFT_2892 0.61 -0.8
196,395 + EX28DRAFT_2892 0.64 -0.5
196,440 + EX28DRAFT_2892 0.67 +1.3
196,441 - EX28DRAFT_2892 0.67 +0.1
196,664 + EX28DRAFT_2892 0.85 -0.1
196,665 - EX28DRAFT_2892 0.85 -0.7
196,704 - EX28DRAFT_2892 0.88 -0.5
196,704 - EX28DRAFT_2892 0.88 +0.0
196,801 + +0.6
196,874 - -0.3
196,928 + -0.4
196,929 - -0.4
196,929 - +0.3
196,949 - -0.7
197,084 + +0.2
197,085 - -3.1
197,085 - -4.4
197,085 - +1.2
197,125 - -0.4
197,256 + EX28DRAFT_2893 0.14 -1.5
197,256 + EX28DRAFT_2893 0.14 -1.9
197,257 - EX28DRAFT_2893 0.14 -1.1
197,257 - EX28DRAFT_2893 0.14 -4.5
197,423 + EX28DRAFT_2893 0.27 -3.3
197,423 + EX28DRAFT_2893 0.27 -1.5
197,549 + EX28DRAFT_2893 0.36 -4.0
197,549 + EX28DRAFT_2893 0.36 -2.2
197,550 - EX28DRAFT_2893 0.36 -2.7

Or see this region's nucleotide sequence