Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2883 and EX28DRAFT_2884 are separated by 128 nucleotides EX28DRAFT_2884 and EX28DRAFT_2885 are separated by 13 nucleotides EX28DRAFT_2885 and EX28DRAFT_2886 are separated by 192 nucleotides EX28DRAFT_2886 and EX28DRAFT_2887 overlap by 1 nucleotides EX28DRAFT_2887 and EX28DRAFT_2888 overlap by 10 nucleotides
EX28DRAFT_2883: EX28DRAFT_2883 - Transcriptional regulator, at 189,786 to 190,703
_2883
EX28DRAFT_2884: EX28DRAFT_2884 - RNA, at 190,832 to 191,039
_2884
EX28DRAFT_2885: EX28DRAFT_2885 - Bacterial protein of unknown function (DUF903), at 191,053 to 191,280
_2885
EX28DRAFT_2886: EX28DRAFT_2886 - cysteine desulfurase, catalytic subunit CsdA, at 191,473 to 192,678
_2886
EX28DRAFT_2887: EX28DRAFT_2887 - cysteine desulfurase, sulfur acceptor subunit CsdE, at 192,678 to 193,124
_2887
EX28DRAFT_2888: EX28DRAFT_2888 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, at 193,115 to 193,921
_2888
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.635 kb on - strand at 190.806 kb on + strand at 190.806 kb on + strand at 190.816 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.820 kb on + strand at 190.821 kb on - strand at 190.822 kb on + strand at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.983 kb on + strand, within EX28DRAFT_2884 at 190.984 kb on - strand, within EX28DRAFT_2884 at 191.005 kb on + strand, within EX28DRAFT_2884 at 191.010 kb on + strand, within EX28DRAFT_2884 at 191.011 kb on - strand, within EX28DRAFT_2884 at 191.179 kb on - strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.207 kb on + strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.208 kb on - strand, within EX28DRAFT_2885 at 191.275 kb on - strand at 191.285 kb on - strand at 191.357 kb on - strand at 191.382 kb on + strand at 191.409 kb on + strand at 191.409 kb on + strand at 191.410 kb on - strand at 191.452 kb on + strand at 191.453 kb on - strand at 191.453 kb on - strand at 191.454 kb on + strand at 191.537 kb on - strand at 191.537 kb on - strand at 191.600 kb on - strand, within EX28DRAFT_2886 at 191.757 kb on + strand, within EX28DRAFT_2886 at 191.757 kb on + strand, within EX28DRAFT_2886 at 192.119 kb on - strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.136 kb on - strand, within EX28DRAFT_2886 at 192.136 kb on - strand, within EX28DRAFT_2886 at 192.610 kb on - strand at 192.612 kb on + strand at 192.665 kb on + strand at 192.666 kb on - strand at 192.684 kb on - strand at 192.737 kb on - strand, within EX28DRAFT_2887 at 192.773 kb on + strand, within EX28DRAFT_2887 at 192.774 kb on - strand, within EX28DRAFT_2887 at 192.777 kb on + strand, within EX28DRAFT_2887 at 192.850 kb on + strand, within EX28DRAFT_2887 at 192.851 kb on - strand, within EX28DRAFT_2887 at 192.851 kb on - strand, within EX28DRAFT_2887 at 193.551 kb on + strand, within EX28DRAFT_2888 at 193.551 kb on + strand, within EX28DRAFT_2888 at 193.552 kb on - strand, within EX28DRAFT_2888 at 193.557 kb on + strand, within EX28DRAFT_2888 at 193.558 kb on - strand, within EX28DRAFT_2888 at 193.558 kb on - strand, within EX28DRAFT_2888 at 193.574 kb on - strand, within EX28DRAFT_2888
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 190,635 - +0.3 190,806 + +0.1 190,806 + -0.4 190,816 + -0.2 190,820 + -2.6 190,820 + -0.0 190,820 + +0.1 190,820 + -0.5 190,820 + -0.0 190,821 - -0.1 190,822 + -1.1 190,983 + EX28DRAFT_2884 0.73 -0.5 190,983 + EX28DRAFT_2884 0.73 -0.9 190,984 - EX28DRAFT_2884 0.73 -1.1 191,005 + EX28DRAFT_2884 0.83 +0.7 191,010 + EX28DRAFT_2884 0.86 +0.3 191,011 - EX28DRAFT_2884 0.86 -1.8 191,179 - EX28DRAFT_2885 0.55 -0.2 191,207 + EX28DRAFT_2885 0.68 +1.3 191,207 + EX28DRAFT_2885 0.68 -0.2 191,207 + EX28DRAFT_2885 0.68 -0.0 191,208 - EX28DRAFT_2885 0.68 -2.4 191,208 - EX28DRAFT_2885 0.68 -0.4 191,275 - +0.3 191,285 - +0.4 191,357 - -0.1 191,382 + -0.0 191,409 + +0.1 191,409 + +0.1 191,410 - -0.8 191,452 + -1.5 191,453 - +0.8 191,453 - -0.4 191,454 + -0.3 191,537 - -0.1 191,537 - -0.4 191,600 - EX28DRAFT_2886 0.11 +2.2 191,757 + EX28DRAFT_2886 0.24 -0.3 191,757 + EX28DRAFT_2886 0.24 +0.2 192,119 - EX28DRAFT_2886 0.54 +0.0 192,135 + EX28DRAFT_2886 0.55 +1.2 192,135 + EX28DRAFT_2886 0.55 -0.1 192,135 + EX28DRAFT_2886 0.55 +0.6 192,136 - EX28DRAFT_2886 0.55 +1.1 192,136 - EX28DRAFT_2886 0.55 +0.1 192,610 - -0.6 192,612 + -0.5 192,665 + -0.8 192,666 - +0.5 192,684 - +0.4 192,737 - EX28DRAFT_2887 0.13 -0.1 192,773 + EX28DRAFT_2887 0.21 +0.5 192,774 - EX28DRAFT_2887 0.21 -0.4 192,777 + EX28DRAFT_2887 0.22 +0.1 192,850 + EX28DRAFT_2887 0.38 +0.2 192,851 - EX28DRAFT_2887 0.39 -0.4 192,851 - EX28DRAFT_2887 0.39 -0.8 193,551 + EX28DRAFT_2888 0.54 -0.1 193,551 + EX28DRAFT_2888 0.54 +0.2 193,552 - EX28DRAFT_2888 0.54 +0.6 193,557 + EX28DRAFT_2888 0.55 -0.3 193,558 - EX28DRAFT_2888 0.55 +0.3 193,558 - EX28DRAFT_2888 0.55 -0.4 193,574 - EX28DRAFT_2888 0.57 -0.1
Or see this region's nucleotide sequence