Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2879 and EX28DRAFT_2880 are separated by 112 nucleotides EX28DRAFT_2880 and EX28DRAFT_2881 are separated by 110 nucleotides
EX28DRAFT_2879: EX28DRAFT_2879 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 185,912 to 187,279
_2879
EX28DRAFT_2880: EX28DRAFT_2880 - 5'-3' exonuclease (including N-terminal domain of PolI), at 187,392 to 188,147
_2880
EX28DRAFT_2881: EX28DRAFT_2881 - Predicted SAM-dependent methyltransferase, at 188,258 to 189,358
_2881
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1
2 at 186.515 kb on - strand, within EX28DRAFT_2879 at 186.646 kb on + strand, within EX28DRAFT_2879 at 186.888 kb on - strand, within EX28DRAFT_2879 at 186.889 kb on + strand, within EX28DRAFT_2879 at 186.889 kb on + strand, within EX28DRAFT_2879 at 186.890 kb on - strand, within EX28DRAFT_2879 at 186.890 kb on - strand, within EX28DRAFT_2879 at 187.036 kb on + strand, within EX28DRAFT_2879 at 187.074 kb on + strand, within EX28DRAFT_2879 at 187.075 kb on - strand, within EX28DRAFT_2879 at 187.075 kb on - strand, within EX28DRAFT_2879 at 187.080 kb on + strand, within EX28DRAFT_2879 at 187.097 kb on - strand, within EX28DRAFT_2879 at 187.135 kb on + strand, within EX28DRAFT_2879 at 187.334 kb on + strand at 187.335 kb on - strand at 187.376 kb on - strand at 187.387 kb on + strand at 187.405 kb on + strand at 187.405 kb on + strand at 187.818 kb on + strand, within EX28DRAFT_2880 at 187.819 kb on - strand, within EX28DRAFT_2880 at 187.819 kb on - strand, within EX28DRAFT_2880 at 188.001 kb on + strand, within EX28DRAFT_2880 at 188.002 kb on - strand, within EX28DRAFT_2880 at 188.092 kb on + strand at 188.092 kb on + strand at 188.104 kb on + strand at 188.104 kb on + strand at 188.123 kb on - strand at 188.137 kb on + strand at 188.305 kb on + strand at 188.305 kb on + strand at 188.306 kb on - strand at 188.306 kb on - strand at 188.310 kb on - strand at 188.310 kb on - strand at 188.358 kb on - strand at 188.358 kb on - strand at 188.394 kb on + strand, within EX28DRAFT_2881 at 188.555 kb on - strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.659 kb on + strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.680 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.719 kb on - strand, within EX28DRAFT_2881 at 188.843 kb on - strand, within EX28DRAFT_2881 at 188.868 kb on + strand, within EX28DRAFT_2881 at 188.875 kb on - strand, within EX28DRAFT_2881 at 188.881 kb on + strand, within EX28DRAFT_2881 at 188.882 kb on - strand, within EX28DRAFT_2881 at 188.883 kb on + strand, within EX28DRAFT_2881 at 188.884 kb on - strand, within EX28DRAFT_2881 at 188.911 kb on + strand, within EX28DRAFT_2881 at 188.940 kb on + strand, within EX28DRAFT_2881 at 189.020 kb on - strand, within EX28DRAFT_2881
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 186,515 - EX28DRAFT_2879 0.44 -0.3 186,646 + EX28DRAFT_2879 0.54 -0.1 186,888 - EX28DRAFT_2879 0.71 -0.1 186,889 + EX28DRAFT_2879 0.71 +1.0 186,889 + EX28DRAFT_2879 0.71 +0.4 186,890 - EX28DRAFT_2879 0.71 -1.4 186,890 - EX28DRAFT_2879 0.71 -0.2 187,036 + EX28DRAFT_2879 0.82 -0.0 187,074 + EX28DRAFT_2879 0.85 -0.2 187,075 - EX28DRAFT_2879 0.85 -0.3 187,075 - EX28DRAFT_2879 0.85 -1.2 187,080 + EX28DRAFT_2879 0.85 -1.0 187,097 - EX28DRAFT_2879 0.87 -1.3 187,135 + EX28DRAFT_2879 0.89 +0.4 187,334 + -1.4 187,335 - +0.0 187,376 - -0.9 187,387 + +0.2 187,405 + +1.0 187,405 + -0.5 187,818 + EX28DRAFT_2880 0.56 +0.4 187,819 - EX28DRAFT_2880 0.56 +0.9 187,819 - EX28DRAFT_2880 0.56 -0.4 188,001 + EX28DRAFT_2880 0.81 +0.0 188,002 - EX28DRAFT_2880 0.81 +0.1 188,092 + -0.7 188,092 + -0.0 188,104 + +0.5 188,104 + +0.2 188,123 - -0.4 188,137 + +0.4 188,305 + -0.9 188,305 + +0.7 188,306 - +0.7 188,306 - +1.1 188,310 - +1.7 188,310 - +0.5 188,358 - +0.3 188,358 - -0.2 188,394 + EX28DRAFT_2881 0.12 +1.4 188,555 - EX28DRAFT_2881 0.27 -1.7 188,659 + EX28DRAFT_2881 0.36 +0.1 188,659 + EX28DRAFT_2881 0.36 +0.6 188,680 - EX28DRAFT_2881 0.38 -0.0 188,680 - EX28DRAFT_2881 0.38 -1.2 188,719 - EX28DRAFT_2881 0.42 -0.4 188,719 - EX28DRAFT_2881 0.42 -0.0 188,719 - EX28DRAFT_2881 0.42 -1.4 188,843 - EX28DRAFT_2881 0.53 +0.4 188,868 + EX28DRAFT_2881 0.55 -0.2 188,875 - EX28DRAFT_2881 0.56 +0.1 188,881 + EX28DRAFT_2881 0.57 +1.8 188,882 - EX28DRAFT_2881 0.57 -1.3 188,883 + EX28DRAFT_2881 0.57 -0.7 188,884 - EX28DRAFT_2881 0.57 +0.1 188,911 + EX28DRAFT_2881 0.59 +0.1 188,940 + EX28DRAFT_2881 0.62 +0.1 189,020 - EX28DRAFT_2881 0.69 +1.2
Or see this region's nucleotide sequence