Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2865

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2864 and EX28DRAFT_2865 are separated by 51 nucleotidesEX28DRAFT_2865 and EX28DRAFT_2866 are separated by 57 nucleotides EX28DRAFT_2864: EX28DRAFT_2864 - (p)ppGpp synthetase, RelA/SpoT family, at 166,835 to 169,066 _2864 EX28DRAFT_2865: EX28DRAFT_2865 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 169,118 to 170,416 _2865 EX28DRAFT_2866: EX28DRAFT_2866 - Uncharacterized domain of BarA-like signal transduction histidine kinases, at 170,474 to 173,233 _2866 Position (kb) 169 170 171Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 168.139 kb on - strand, within EX28DRAFT_2864at 168.182 kb on + strand, within EX28DRAFT_2864at 168.183 kb on - strand, within EX28DRAFT_2864at 168.298 kb on - strand, within EX28DRAFT_2864at 168.302 kb on - strand, within EX28DRAFT_2864at 169.080 kb on - strandat 169.120 kb on - strandat 169.260 kb on + strand, within EX28DRAFT_2865at 169.260 kb on + strand, within EX28DRAFT_2865at 169.260 kb on + strand, within EX28DRAFT_2865at 169.260 kb on + strand, within EX28DRAFT_2865at 169.261 kb on - strand, within EX28DRAFT_2865at 169.285 kb on + strand, within EX28DRAFT_2865at 169.288 kb on + strand, within EX28DRAFT_2865at 169.289 kb on - strand, within EX28DRAFT_2865at 169.289 kb on - strand, within EX28DRAFT_2865at 169.291 kb on + strand, within EX28DRAFT_2865at 169.291 kb on + strand, within EX28DRAFT_2865at 169.291 kb on + strand, within EX28DRAFT_2865at 169.291 kb on + strand, within EX28DRAFT_2865at 169.291 kb on + strand, within EX28DRAFT_2865at 169.292 kb on - strand, within EX28DRAFT_2865at 169.292 kb on - strand, within EX28DRAFT_2865at 169.292 kb on - strand, within EX28DRAFT_2865at 169.292 kb on - strand, within EX28DRAFT_2865at 169.704 kb on - strand, within EX28DRAFT_2865at 170.081 kb on - strand, within EX28DRAFT_2865at 170.121 kb on - strand, within EX28DRAFT_2865at 170.121 kb on - strand, within EX28DRAFT_2865at 170.295 kb on - strandat 170.309 kb on - strandat 170.366 kb on - strandat 170.403 kb on + strandat 170.404 kb on - strandat 170.436 kb on + strandat 170.436 kb on + strandat 170.436 kb on + strandat 170.437 kb on - strandat 170.442 kb on + strandat 170.442 kb on + strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.447 kb on - strandat 170.447 kb on - strandat 170.452 kb on - strandat 170.551 kb on + strandat 170.721 kb on + strandat 170.891 kb on + strand, within EX28DRAFT_2866at 170.891 kb on + strand, within EX28DRAFT_2866at 170.892 kb on - strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.938 kb on + strand, within EX28DRAFT_2866at 170.939 kb on - strand, within EX28DRAFT_2866at 170.993 kb on + strand, within EX28DRAFT_2866at 170.994 kb on - strand, within EX28DRAFT_2866at 170.994 kb on - strand, within EX28DRAFT_2866at 171.158 kb on - strand, within EX28DRAFT_2866at 171.370 kb on + strand, within EX28DRAFT_2866

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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168,139 - EX28DRAFT_2864 0.58 -4.1
168,182 + EX28DRAFT_2864 0.60 -2.0
168,183 - EX28DRAFT_2864 0.60 -1.6
168,298 - EX28DRAFT_2864 0.66 -5.6
168,302 - EX28DRAFT_2864 0.66 -2.5
169,080 - +0.2
169,120 - -1.0
169,260 + EX28DRAFT_2865 0.11 -2.0
169,260 + EX28DRAFT_2865 0.11 +1.1
169,260 + EX28DRAFT_2865 0.11 -0.7
169,260 + EX28DRAFT_2865 0.11 -0.7
169,261 - EX28DRAFT_2865 0.11 -0.4
169,285 + EX28DRAFT_2865 0.13 -1.3
169,288 + EX28DRAFT_2865 0.13 -0.5
169,289 - EX28DRAFT_2865 0.13 -0.8
169,289 - EX28DRAFT_2865 0.13 -0.1
169,291 + EX28DRAFT_2865 0.13 -0.8
169,291 + EX28DRAFT_2865 0.13 +1.2
169,291 + EX28DRAFT_2865 0.13 +0.0
169,291 + EX28DRAFT_2865 0.13 -0.6
169,291 + EX28DRAFT_2865 0.13 -0.2
169,292 - EX28DRAFT_2865 0.13 -0.0
169,292 - EX28DRAFT_2865 0.13 +0.5
169,292 - EX28DRAFT_2865 0.13 +0.2
169,292 - EX28DRAFT_2865 0.13 +0.5
169,704 - EX28DRAFT_2865 0.45 -3.7
170,081 - EX28DRAFT_2865 0.74 +0.4
170,121 - EX28DRAFT_2865 0.77 -0.0
170,121 - EX28DRAFT_2865 0.77 -0.4
170,295 - -0.3
170,309 - +1.2
170,366 - +0.3
170,403 + +1.0
170,404 - +0.4
170,436 + +0.1
170,436 + -0.5
170,436 + +0.5
170,437 - -0.5
170,442 + +0.8
170,442 + -0.0
170,443 - +0.1
170,443 - -0.6
170,443 - -0.2
170,447 - -0.0
170,447 - +0.5
170,452 - +0.0
170,551 + +1.0
170,721 + -0.9
170,891 + EX28DRAFT_2866 0.15 -0.5
170,891 + EX28DRAFT_2866 0.15 -0.0
170,892 - EX28DRAFT_2866 0.15 -0.5
170,938 + EX28DRAFT_2866 0.17 +0.2
170,938 + EX28DRAFT_2866 0.17 +2.4
170,938 + EX28DRAFT_2866 0.17 -2.4
170,939 - EX28DRAFT_2866 0.17 +1.4
170,993 + EX28DRAFT_2866 0.19 +0.2
170,994 - EX28DRAFT_2866 0.19 -0.5
170,994 - EX28DRAFT_2866 0.19 -0.0
171,158 - EX28DRAFT_2866 0.25 -0.5
171,370 + EX28DRAFT_2866 0.32 -0.8

Or see this region's nucleotide sequence