Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2850 and EX28DRAFT_2851 are separated by 71 nucleotides EX28DRAFT_2851 and EX28DRAFT_2852 are separated by 15 nucleotides EX28DRAFT_2852 and EX28DRAFT_2853 overlap by 1 nucleotides
EX28DRAFT_2850: EX28DRAFT_2850 - Predicted aminopeptidases, at 151,093 to 152,136
_2850
EX28DRAFT_2851: EX28DRAFT_2851 - phosphoadenosine phosphosulfate reductase, thioredoxin dependent, at 152,208 to 152,942
_2851
EX28DRAFT_2852: EX28DRAFT_2852 - sulfite reductase (NADPH) hemoprotein, beta-component, at 152,958 to 154,670
_2852
EX28DRAFT_2853: EX28DRAFT_2853 - sulfite reductase [NADPH] flavoprotein, alpha-component, at 154,670 to 156,475
_2853
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 152.143 kb on + strand at 152.144 kb on - strand at 152.163 kb on - strand at 152.163 kb on - strand at 152.365 kb on + strand, within EX28DRAFT_2851 at 152.632 kb on + strand, within EX28DRAFT_2851 at 152.676 kb on - strand, within EX28DRAFT_2851 at 152.778 kb on - strand, within EX28DRAFT_2851 at 152.800 kb on + strand, within EX28DRAFT_2851 at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.942 kb on + strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.943 kb on - strand at 152.946 kb on + strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 152.947 kb on - strand at 153.018 kb on - strand at 153.123 kb on - strand at 153.123 kb on - strand at 153.143 kb on + strand, within EX28DRAFT_2852 at 153.252 kb on - strand, within EX28DRAFT_2852 at 153.252 kb on - strand, within EX28DRAFT_2852 at 153.257 kb on + strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.258 kb on - strand, within EX28DRAFT_2852 at 153.513 kb on - strand, within EX28DRAFT_2852 at 153.572 kb on + strand, within EX28DRAFT_2852 at 153.745 kb on + strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.746 kb on - strand, within EX28DRAFT_2852 at 153.872 kb on - strand, within EX28DRAFT_2852 at 153.923 kb on + strand, within EX28DRAFT_2852 at 154.039 kb on + strand, within EX28DRAFT_2852 at 154.040 kb on - strand, within EX28DRAFT_2852 at 154.159 kb on + strand, within EX28DRAFT_2852 at 154.345 kb on + strand, within EX28DRAFT_2852 at 154.499 kb on - strand at 154.499 kb on - strand at 154.499 kb on - strand at 154.503 kb on - strand at 154.632 kb on - strand at 154.821 kb on + strand at 154.821 kb on + strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.822 kb on - strand at 154.886 kb on + strand, within EX28DRAFT_2853 at 154.886 kb on + strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.887 kb on - strand, within EX28DRAFT_2853 at 154.890 kb on + strand, within EX28DRAFT_2853 at 154.890 kb on + strand, within EX28DRAFT_2853 at 154.941 kb on - strand, within EX28DRAFT_2853 at 154.956 kb on + strand, within EX28DRAFT_2853 at 154.957 kb on - strand, within EX28DRAFT_2853 at 155.059 kb on + strand, within EX28DRAFT_2853 at 155.060 kb on - strand, within EX28DRAFT_2853
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 152,143 + -1.3 152,144 - -1.1 152,163 - -0.0 152,163 - +0.4 152,365 + EX28DRAFT_2851 0.21 -2.0 152,632 + EX28DRAFT_2851 0.58 -1.4 152,676 - EX28DRAFT_2851 0.64 -4.3 152,778 - EX28DRAFT_2851 0.78 -1.5 152,800 + EX28DRAFT_2851 0.81 -2.3 152,942 + -1.8 152,942 + -3.0 152,942 + -1.3 152,942 + -1.4 152,943 - -0.7 152,943 - +1.2 152,943 - -3.5 152,943 - -0.3 152,946 + -2.4 152,947 - +0.2 152,947 - -1.4 152,947 - -2.6 152,947 - -0.3 153,018 - -3.3 153,123 - -2.5 153,123 - -1.9 153,143 + EX28DRAFT_2852 0.11 -3.2 153,252 - EX28DRAFT_2852 0.17 -1.7 153,252 - EX28DRAFT_2852 0.17 -0.2 153,257 + EX28DRAFT_2852 0.17 -2.9 153,258 - EX28DRAFT_2852 0.18 -3.6 153,258 - EX28DRAFT_2852 0.18 -0.5 153,258 - EX28DRAFT_2852 0.18 -1.9 153,258 - EX28DRAFT_2852 0.18 -3.1 153,258 - EX28DRAFT_2852 0.18 -1.2 153,513 - EX28DRAFT_2852 0.32 -3.4 153,572 + EX28DRAFT_2852 0.36 +0.6 153,745 + EX28DRAFT_2852 0.46 -4.3 153,746 - EX28DRAFT_2852 0.46 -2.9 153,746 - EX28DRAFT_2852 0.46 -0.7 153,746 - EX28DRAFT_2852 0.46 -1.3 153,746 - EX28DRAFT_2852 0.46 -1.5 153,746 - EX28DRAFT_2852 0.46 -0.9 153,872 - EX28DRAFT_2852 0.53 +1.0 153,923 + EX28DRAFT_2852 0.56 -1.3 154,039 + EX28DRAFT_2852 0.63 -2.6 154,040 - EX28DRAFT_2852 0.63 -0.7 154,159 + EX28DRAFT_2852 0.70 -1.6 154,345 + EX28DRAFT_2852 0.81 -1.7 154,499 - -0.4 154,499 - -1.5 154,499 - -1.6 154,503 - -0.6 154,632 - -0.5 154,821 + -1.1 154,821 + -1.5 154,822 - -2.9 154,822 - -2.1 154,822 - -1.7 154,822 - -2.2 154,822 - -2.7 154,886 + EX28DRAFT_2853 0.12 -1.8 154,886 + EX28DRAFT_2853 0.12 -0.1 154,887 - EX28DRAFT_2853 0.12 -2.7 154,887 - EX28DRAFT_2853 0.12 -3.5 154,887 - EX28DRAFT_2853 0.12 -2.7 154,890 + EX28DRAFT_2853 0.12 -2.9 154,890 + EX28DRAFT_2853 0.12 -4.4 154,941 - EX28DRAFT_2853 0.15 -0.1 154,956 + EX28DRAFT_2853 0.16 -1.3 154,957 - EX28DRAFT_2853 0.16 -1.0 155,059 + EX28DRAFT_2853 0.22 -1.1 155,060 - EX28DRAFT_2853 0.22 -1.1
Or see this region's nucleotide sequence