Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2838

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2837 and EX28DRAFT_2838 are separated by 59 nucleotidesEX28DRAFT_2838 and EX28DRAFT_2839 are separated by 116 nucleotidesEX28DRAFT_2839 and EX28DRAFT_2840 overlap by 7 nucleotides EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759 _2837 EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943 _2838 EX28DRAFT_2839: EX28DRAFT_2839 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 142,060 to 142,686 _2839 EX28DRAFT_2840: EX28DRAFT_2840 - 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11), at 142,680 to 143,441 _2840 Position (kb) 140 141 142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 140.102 kb on + strand, within EX28DRAFT_2837at 140.102 kb on + strand, within EX28DRAFT_2837at 140.103 kb on - strand, within EX28DRAFT_2837at 140.126 kb on + strand, within EX28DRAFT_2837at 140.126 kb on + strand, within EX28DRAFT_2837at 140.199 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.286 kb on - strand, within EX28DRAFT_2837at 140.385 kb on + strand, within EX28DRAFT_2837at 140.385 kb on + strand, within EX28DRAFT_2837at 140.386 kb on - strand, within EX28DRAFT_2837at 140.527 kb on + strand, within EX28DRAFT_2837at 140.579 kb on - strand, within EX28DRAFT_2837at 140.579 kb on - strand, within EX28DRAFT_2837at 140.598 kb on + strand, within EX28DRAFT_2837at 140.667 kb on + strandat 140.668 kb on - strandat 140.671 kb on - strandat 140.727 kb on + strandat 140.760 kb on - strandat 140.760 kb on - strandat 140.890 kb on + strandat 140.939 kb on - strand, within EX28DRAFT_2838at 140.983 kb on - strand, within EX28DRAFT_2838at 140.995 kb on - strand, within EX28DRAFT_2838at 141.005 kb on - strand, within EX28DRAFT_2838at 141.017 kb on - strand, within EX28DRAFT_2838at 141.019 kb on + strand, within EX28DRAFT_2838at 141.020 kb on - strand, within EX28DRAFT_2838at 141.121 kb on + strand, within EX28DRAFT_2838at 141.208 kb on + strand, within EX28DRAFT_2838at 141.209 kb on - strand, within EX28DRAFT_2838at 141.209 kb on - strand, within EX28DRAFT_2838at 141.283 kb on + strand, within EX28DRAFT_2838at 141.287 kb on - strand, within EX28DRAFT_2838at 141.305 kb on - strand, within EX28DRAFT_2838at 141.337 kb on + strand, within EX28DRAFT_2838at 141.386 kb on - strand, within EX28DRAFT_2838at 141.440 kb on - strand, within EX28DRAFT_2838at 141.561 kb on + strand, within EX28DRAFT_2838at 141.561 kb on + strand, within EX28DRAFT_2838at 141.562 kb on - strand, within EX28DRAFT_2838at 141.590 kb on - strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.591 kb on + strand, within EX28DRAFT_2838at 141.592 kb on - strand, within EX28DRAFT_2838at 141.609 kb on + strand, within EX28DRAFT_2838at 141.645 kb on + strand, within EX28DRAFT_2838at 141.856 kb on + strandat 141.857 kb on - strandat 141.857 kb on - strandat 141.866 kb on - strandat 141.945 kb on + strandat 141.968 kb on - strandat 141.986 kb on - strandat 142.020 kb on - strandat 142.038 kb on + strandat 142.039 kb on - strandat 142.120 kb on - strandat 142.317 kb on + strand, within EX28DRAFT_2839at 142.360 kb on + strand, within EX28DRAFT_2839at 142.361 kb on - strand, within EX28DRAFT_2839at 142.387 kb on + strand, within EX28DRAFT_2839at 142.387 kb on + strand, within EX28DRAFT_2839at 142.388 kb on - strand, within EX28DRAFT_2839at 142.388 kb on - strand, within EX28DRAFT_2839at 142.388 kb on - strand, within EX28DRAFT_2839at 142.502 kb on + strand, within EX28DRAFT_2839at 142.502 kb on + strand, within EX28DRAFT_2839at 142.502 kb on + strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.503 kb on - strand, within EX28DRAFT_2839at 142.544 kb on - strand, within EX28DRAFT_2839at 142.580 kb on - strand, within EX28DRAFT_2839at 142.740 kb on - strandat 142.742 kb on - strandat 142.781 kb on - strand, within EX28DRAFT_2840at 142.830 kb on - strand, within EX28DRAFT_2840

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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140,102 + EX28DRAFT_2837 0.34 +2.4
140,102 + EX28DRAFT_2837 0.34 +1.5
140,103 - EX28DRAFT_2837 0.34 +1.8
140,126 + EX28DRAFT_2837 0.36 +1.3
140,126 + EX28DRAFT_2837 0.36 +2.0
140,199 - EX28DRAFT_2837 0.44 +1.4
140,286 - EX28DRAFT_2837 0.52 +0.9
140,286 - EX28DRAFT_2837 0.52 +1.6
140,286 - EX28DRAFT_2837 0.52 +2.3
140,385 + EX28DRAFT_2837 0.62 +2.5
140,385 + EX28DRAFT_2837 0.62 +3.4
140,386 - EX28DRAFT_2837 0.62 +1.7
140,527 + EX28DRAFT_2837 0.77 +2.0
140,579 - EX28DRAFT_2837 0.82 +1.1
140,579 - EX28DRAFT_2837 0.82 +2.5
140,598 + EX28DRAFT_2837 0.84 +1.5
140,667 + +3.0
140,668 - -0.2
140,671 - +1.7
140,727 + +0.8
140,760 - +2.6
140,760 - +2.3
140,890 + +1.1
140,939 - EX28DRAFT_2838 0.11 +1.3
140,983 - EX28DRAFT_2838 0.15 +1.7
140,995 - EX28DRAFT_2838 0.16 +1.0
141,005 - EX28DRAFT_2838 0.17 +1.4
141,017 - EX28DRAFT_2838 0.18 +0.3
141,019 + EX28DRAFT_2838 0.18 +1.3
141,020 - EX28DRAFT_2838 0.18 +1.0
141,121 + EX28DRAFT_2838 0.27 +1.6
141,208 + EX28DRAFT_2838 0.35 +1.7
141,209 - EX28DRAFT_2838 0.35 +1.7
141,209 - EX28DRAFT_2838 0.35 +0.2
141,283 + EX28DRAFT_2838 0.41 +1.5
141,287 - EX28DRAFT_2838 0.42 +0.9
141,305 - EX28DRAFT_2838 0.43 +1.7
141,337 + EX28DRAFT_2838 0.46 +1.9
141,386 - EX28DRAFT_2838 0.50 +0.2
141,440 - EX28DRAFT_2838 0.55 -0.4
141,561 + EX28DRAFT_2838 0.66 +0.1
141,561 + EX28DRAFT_2838 0.66 -0.1
141,562 - EX28DRAFT_2838 0.66 -0.4
141,590 - EX28DRAFT_2838 0.69 +0.2
141,591 + EX28DRAFT_2838 0.69 +0.8
141,591 + EX28DRAFT_2838 0.69 +0.3
141,591 + EX28DRAFT_2838 0.69 -1.5
141,592 - EX28DRAFT_2838 0.69 -0.3
141,609 + EX28DRAFT_2838 0.70 -1.1
141,645 + EX28DRAFT_2838 0.73 -2.2
141,856 + +1.6
141,857 - +0.6
141,857 - -0.6
141,866 - -0.3
141,945 + -0.1
141,968 - -2.0
141,986 - +0.4
142,020 - -0.5
142,038 + -0.3
142,039 - -0.1
142,120 - +0.1
142,317 + EX28DRAFT_2839 0.41 -1.0
142,360 + EX28DRAFT_2839 0.48 -2.7
142,361 - EX28DRAFT_2839 0.48 +0.4
142,387 + EX28DRAFT_2839 0.52 -0.6
142,387 + EX28DRAFT_2839 0.52 -2.6
142,388 - EX28DRAFT_2839 0.52 -0.2
142,388 - EX28DRAFT_2839 0.52 -2.0
142,388 - EX28DRAFT_2839 0.52 -1.4
142,502 + EX28DRAFT_2839 0.70 -1.0
142,502 + EX28DRAFT_2839 0.70 +0.6
142,502 + EX28DRAFT_2839 0.70 -3.1
142,503 - EX28DRAFT_2839 0.71 -0.2
142,503 - EX28DRAFT_2839 0.71 -1.4
142,503 - EX28DRAFT_2839 0.71 -0.8
142,503 - EX28DRAFT_2839 0.71 -0.8
142,503 - EX28DRAFT_2839 0.71 +0.1
142,544 - EX28DRAFT_2839 0.77 -1.0
142,580 - EX28DRAFT_2839 0.83 -1.8
142,740 - -0.1
142,742 - -2.3
142,781 - EX28DRAFT_2840 0.13 +0.1
142,830 - EX28DRAFT_2840 0.20 +0.3

Or see this region's nucleotide sequence