Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2835 and EX28DRAFT_2836 overlap by 4 nucleotides EX28DRAFT_2836 and EX28DRAFT_2837 are separated by 52 nucleotides
EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340
_2835
EX28DRAFT_2836: EX28DRAFT_2836 - Uncharacterized protein conserved in bacteria, at 139,337 to 139,714
_2836
EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759
_2837
Position (kb) 139
140 Strain fitness (log2 ratio) -1
0
1
2
3 at 138.467 kb on - strand, within EX28DRAFT_2835 at 138.607 kb on + strand, within EX28DRAFT_2835 at 138.608 kb on - strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.819 kb on + strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.924 kb on - strand, within EX28DRAFT_2835 at 139.034 kb on + strand, within EX28DRAFT_2835 at 139.039 kb on + strand, within EX28DRAFT_2835 at 139.142 kb on + strand, within EX28DRAFT_2835 at 139.244 kb on + strand at 139.282 kb on - strand at 139.295 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.481 kb on + strand, within EX28DRAFT_2836 at 139.554 kb on + strand, within EX28DRAFT_2836 at 139.555 kb on - strand, within EX28DRAFT_2836 at 139.706 kb on - strand at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.103 kb on - strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.199 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.386 kb on - strand, within EX28DRAFT_2837 at 140.527 kb on + strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.598 kb on + strand, within EX28DRAFT_2837 at 140.667 kb on + strand at 140.668 kb on - strand at 140.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 138,467 - EX28DRAFT_2835 0.27 -0.7 138,607 + EX28DRAFT_2835 0.39 +0.0 138,608 - EX28DRAFT_2835 0.39 -0.7 138,768 + EX28DRAFT_2835 0.52 +0.5 138,768 + EX28DRAFT_2835 0.52 -0.2 138,768 + EX28DRAFT_2835 0.52 -0.1 138,769 - EX28DRAFT_2835 0.52 +0.4 138,769 - EX28DRAFT_2835 0.52 -0.3 138,769 - EX28DRAFT_2835 0.52 +1.1 138,769 - EX28DRAFT_2835 0.52 -0.4 138,770 + EX28DRAFT_2835 0.53 +0.0 138,770 + EX28DRAFT_2835 0.53 -0.2 138,819 + EX28DRAFT_2835 0.57 -1.1 138,820 - EX28DRAFT_2835 0.57 -0.1 138,820 - EX28DRAFT_2835 0.57 +0.6 138,924 - EX28DRAFT_2835 0.65 +0.3 139,034 + EX28DRAFT_2835 0.74 -1.3 139,039 + EX28DRAFT_2835 0.75 -0.8 139,142 + EX28DRAFT_2835 0.83 +0.8 139,244 + -0.1 139,282 - -0.0 139,295 + +0.5 139,301 + +0.9 139,301 + -0.2 139,301 + -0.1 139,481 + EX28DRAFT_2836 0.38 -0.9 139,554 + EX28DRAFT_2836 0.57 +0.2 139,555 - EX28DRAFT_2836 0.58 -0.5 139,706 - -0.3 140,102 + EX28DRAFT_2837 0.34 +2.4 140,102 + EX28DRAFT_2837 0.34 +1.5 140,103 - EX28DRAFT_2837 0.34 +1.8 140,126 + EX28DRAFT_2837 0.36 +1.3 140,126 + EX28DRAFT_2837 0.36 +2.0 140,199 - EX28DRAFT_2837 0.44 +1.4 140,286 - EX28DRAFT_2837 0.52 +0.9 140,286 - EX28DRAFT_2837 0.52 +1.6 140,286 - EX28DRAFT_2837 0.52 +2.3 140,385 + EX28DRAFT_2837 0.62 +2.5 140,385 + EX28DRAFT_2837 0.62 +3.4 140,386 - EX28DRAFT_2837 0.62 +1.7 140,527 + EX28DRAFT_2837 0.77 +2.0 140,579 - EX28DRAFT_2837 0.82 +1.1 140,579 - EX28DRAFT_2837 0.82 +2.5 140,598 + EX28DRAFT_2837 0.84 +1.5 140,667 + +3.0 140,668 - -0.2 140,671 - +1.7
Or see this region's nucleotide sequence