Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2832 and EX28DRAFT_2833 are separated by 171 nucleotides EX28DRAFT_2833 and EX28DRAFT_2834 overlap by 4 nucleotides EX28DRAFT_2834 and EX28DRAFT_2835 are separated by 105 nucleotides
EX28DRAFT_2832: EX28DRAFT_2832 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 135,964 to 136,566
_2832
EX28DRAFT_2833: EX28DRAFT_2833 - Transcriptional regulators, at 136,738 to 137,145
_2833
EX28DRAFT_2834: EX28DRAFT_2834 - Transcriptional regulator, at 137,142 to 138,032
_2834
EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340
_2835
Position (kb) 137
138
139 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.356 kb on + strand, within EX28DRAFT_2832 at 136.556 kb on - strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.612 kb on + strand at 136.908 kb on + strand, within EX28DRAFT_2833 at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.221 kb on + strand at 137.221 kb on + strand at 137.243 kb on + strand, within EX28DRAFT_2834 at 137.244 kb on - strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.246 kb on - strand, within EX28DRAFT_2834 at 137.463 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.725 kb on + strand, within EX28DRAFT_2834 at 137.911 kb on - strand, within EX28DRAFT_2834 at 137.922 kb on - strand, within EX28DRAFT_2834 at 138.024 kb on - strand at 138.107 kb on + strand at 138.108 kb on - strand at 138.112 kb on + strand at 138.144 kb on + strand at 138.168 kb on + strand at 138.200 kb on + strand at 138.200 kb on + strand at 138.200 kb on + strand at 138.201 kb on - strand at 138.201 kb on - strand at 138.207 kb on - strand at 138.286 kb on - strand, within EX28DRAFT_2835 at 138.467 kb on - strand, within EX28DRAFT_2835 at 138.607 kb on + strand, within EX28DRAFT_2835 at 138.608 kb on - strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.819 kb on + strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.924 kb on - strand, within EX28DRAFT_2835
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 136,356 + EX28DRAFT_2832 0.65 +2.2 136,556 - -0.4 136,607 + +0.2 136,607 + +0.2 136,607 + -0.3 136,608 - -0.1 136,608 - +0.4 136,608 - -0.3 136,612 + +0.6 136,908 + EX28DRAFT_2833 0.42 -1.8 137,144 - -0.1 137,144 - +0.9 137,144 - -0.5 137,144 - +0.3 137,221 + -0.4 137,221 + +1.6 137,243 + EX28DRAFT_2834 0.11 +0.2 137,244 - EX28DRAFT_2834 0.11 -1.9 137,245 + EX28DRAFT_2834 0.12 -0.2 137,245 + EX28DRAFT_2834 0.12 -0.7 137,245 + EX28DRAFT_2834 0.12 -0.5 137,246 - EX28DRAFT_2834 0.12 -0.1 137,463 - EX28DRAFT_2834 0.36 +1.3 137,628 - EX28DRAFT_2834 0.55 -0.7 137,628 - EX28DRAFT_2834 0.55 -0.4 137,725 + EX28DRAFT_2834 0.65 -0.1 137,911 - EX28DRAFT_2834 0.86 -0.4 137,922 - EX28DRAFT_2834 0.88 -0.2 138,024 - +0.4 138,107 + -0.3 138,108 - -0.5 138,112 + +0.3 138,144 + -0.4 138,168 + +0.0 138,200 + +0.7 138,200 + +0.8 138,200 + +0.1 138,201 - -0.2 138,201 - -1.7 138,207 - +1.5 138,286 - EX28DRAFT_2835 0.12 +0.1 138,467 - EX28DRAFT_2835 0.27 -0.7 138,607 + EX28DRAFT_2835 0.39 +0.0 138,608 - EX28DRAFT_2835 0.39 -0.7 138,768 + EX28DRAFT_2835 0.52 +0.5 138,768 + EX28DRAFT_2835 0.52 -0.2 138,768 + EX28DRAFT_2835 0.52 -0.1 138,769 - EX28DRAFT_2835 0.52 +0.4 138,769 - EX28DRAFT_2835 0.52 -0.3 138,769 - EX28DRAFT_2835 0.52 +1.1 138,769 - EX28DRAFT_2835 0.52 -0.4 138,770 + EX28DRAFT_2835 0.53 +0.0 138,770 + EX28DRAFT_2835 0.53 -0.2 138,819 + EX28DRAFT_2835 0.57 -1.1 138,820 - EX28DRAFT_2835 0.57 -0.1 138,820 - EX28DRAFT_2835 0.57 +0.6 138,924 - EX28DRAFT_2835 0.65 +0.3
Or see this region's nucleotide sequence