Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2824

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2823 and EX28DRAFT_2824 overlap by 1 nucleotidesEX28DRAFT_2824 and EX28DRAFT_2825 overlap by 1 nucleotidesEX28DRAFT_2825 and EX28DRAFT_2826 are separated by 16 nucleotides EX28DRAFT_2823: EX28DRAFT_2823 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 126,711 to 127,709 _2823 EX28DRAFT_2824: EX28DRAFT_2824 - ABC-type Fe3+-siderophore transport system, permease component, at 127,709 to 128,746 _2824 EX28DRAFT_2825: EX28DRAFT_2825 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 128,746 to 129,507 _2825 EX28DRAFT_2826: EX28DRAFT_2826 - Major Facilitator Superfamily, at 129,524 to 130,744 _2826 Position (kb) 127 128 129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 126.734 kb on - strandat 126.777 kb on + strandat 126.778 kb on - strandat 126.778 kb on - strandat 126.778 kb on - strandat 127.062 kb on - strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.107 kb on + strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.108 kb on - strand, within EX28DRAFT_2823at 127.155 kb on + strand, within EX28DRAFT_2823at 127.188 kb on + strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.189 kb on - strand, within EX28DRAFT_2823at 127.194 kb on + strand, within EX28DRAFT_2823at 127.308 kb on - strand, within EX28DRAFT_2823at 127.365 kb on + strand, within EX28DRAFT_2823at 127.430 kb on + strand, within EX28DRAFT_2823at 127.430 kb on + strand, within EX28DRAFT_2823at 127.431 kb on - strand, within EX28DRAFT_2823at 127.431 kb on - strand, within EX28DRAFT_2823at 127.473 kb on - strand, within EX28DRAFT_2823at 127.611 kb on - strandat 127.723 kb on - strandat 127.723 kb on - strandat 127.847 kb on + strand, within EX28DRAFT_2824at 127.847 kb on + strand, within EX28DRAFT_2824at 127.848 kb on - strand, within EX28DRAFT_2824at 127.899 kb on - strand, within EX28DRAFT_2824at 128.073 kb on + strand, within EX28DRAFT_2824at 128.188 kb on + strand, within EX28DRAFT_2824at 128.189 kb on - strand, within EX28DRAFT_2824at 128.240 kb on + strand, within EX28DRAFT_2824at 128.437 kb on + strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.438 kb on - strand, within EX28DRAFT_2824at 128.722 kb on + strandat 128.722 kb on + strandat 128.723 kb on - strandat 128.723 kb on - strandat 128.741 kb on - strandat 128.781 kb on - strandat 128.866 kb on - strand, within EX28DRAFT_2825at 129.135 kb on + strand, within EX28DRAFT_2825at 129.136 kb on - strand, within EX28DRAFT_2825at 129.189 kb on + strand, within EX28DRAFT_2825at 129.409 kb on - strand, within EX28DRAFT_2825at 129.414 kb on - strand, within EX28DRAFT_2825at 129.564 kb on + strandat 129.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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126,734 - +0.3
126,777 + -0.5
126,778 - +0.6
126,778 - -0.1
126,778 - -0.8
127,062 - EX28DRAFT_2823 0.35 -2.3
127,107 + EX28DRAFT_2823 0.40 -0.7
127,107 + EX28DRAFT_2823 0.40 +0.2
127,107 + EX28DRAFT_2823 0.40 -0.2
127,108 - EX28DRAFT_2823 0.40 -3.6
127,108 - EX28DRAFT_2823 0.40 +0.7
127,108 - EX28DRAFT_2823 0.40 +0.2
127,155 + EX28DRAFT_2823 0.44 -0.6
127,188 + EX28DRAFT_2823 0.48 -0.7
127,189 - EX28DRAFT_2823 0.48 -1.2
127,189 - EX28DRAFT_2823 0.48 -0.8
127,189 - EX28DRAFT_2823 0.48 -4.8
127,194 + EX28DRAFT_2823 0.48 -0.2
127,308 - EX28DRAFT_2823 0.60 -1.5
127,365 + EX28DRAFT_2823 0.65 -1.5
127,430 + EX28DRAFT_2823 0.72 +0.4
127,430 + EX28DRAFT_2823 0.72 -0.1
127,431 - EX28DRAFT_2823 0.72 +0.3
127,431 - EX28DRAFT_2823 0.72 -0.3
127,473 - EX28DRAFT_2823 0.76 +0.0
127,611 - -0.4
127,723 - -0.8
127,723 - -1.0
127,847 + EX28DRAFT_2824 0.13 +0.5
127,847 + EX28DRAFT_2824 0.13 -0.5
127,848 - EX28DRAFT_2824 0.13 -0.4
127,899 - EX28DRAFT_2824 0.18 +0.4
128,073 + EX28DRAFT_2824 0.35 +0.2
128,188 + EX28DRAFT_2824 0.46 -1.7
128,189 - EX28DRAFT_2824 0.46 -1.1
128,240 + EX28DRAFT_2824 0.51 +0.2
128,437 + EX28DRAFT_2824 0.70 -2.0
128,438 - EX28DRAFT_2824 0.70 +0.0
128,438 - EX28DRAFT_2824 0.70 +0.4
128,438 - EX28DRAFT_2824 0.70 -0.4
128,438 - EX28DRAFT_2824 0.70 +3.2
128,438 - EX28DRAFT_2824 0.70 -0.0
128,722 + +0.2
128,722 + +0.2
128,723 - +0.2
128,723 - -0.1
128,741 - +0.3
128,781 - +0.3
128,866 - EX28DRAFT_2825 0.16 +0.5
129,135 + EX28DRAFT_2825 0.51 -0.2
129,136 - EX28DRAFT_2825 0.51 -0.7
129,189 + EX28DRAFT_2825 0.58 +0.2
129,409 - EX28DRAFT_2825 0.87 -0.3
129,414 - EX28DRAFT_2825 0.88 -2.1
129,564 + -0.0
129,600 - +0.6

Or see this region's nucleotide sequence