Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2803 and EX28DRAFT_2804 are separated by 5 nucleotides EX28DRAFT_2804 and EX28DRAFT_2805 are separated by 134 nucleotides EX28DRAFT_2805 and EX28DRAFT_2806 are separated by 214 nucleotides
EX28DRAFT_2803: EX28DRAFT_2803 - [NiFe] hydrogenase maturation protein HypF, at 105,712 to 107,928
_2803
EX28DRAFT_2804: EX28DRAFT_2804 - Fe-S-cluster-containing hydrogenase components 2, at 107,934 to 108,479
_2804
EX28DRAFT_2805: EX28DRAFT_2805 - Transcriptional regulators, at 108,614 to 109,627
_2805
EX28DRAFT_2806: EX28DRAFT_2806 - Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, at 109,842 to 111,293
_2806
Position (kb)
108
109
110 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.673 kb on + strand, within EX28DRAFT_2803 at 107.674 kb on - strand, within EX28DRAFT_2803 at 107.911 kb on + strand at 107.912 kb on - strand at 107.928 kb on + strand at 107.928 kb on + strand at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.117 kb on + strand, within EX28DRAFT_2804 at 108.118 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.145 kb on - strand, within EX28DRAFT_2804 at 108.147 kb on + strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.229 kb on - strand, within EX28DRAFT_2804 at 108.254 kb on + strand, within EX28DRAFT_2804 at 108.320 kb on + strand, within EX28DRAFT_2804 at 108.327 kb on - strand, within EX28DRAFT_2804 at 108.432 kb on - strand at 108.449 kb on + strand at 108.450 kb on - strand at 108.467 kb on + strand at 108.468 kb on - strand at 108.468 kb on - strand at 108.495 kb on + strand at 108.496 kb on - strand at 108.502 kb on - strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.591 kb on + strand at 108.592 kb on - strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.682 kb on + strand at 108.752 kb on - strand, within EX28DRAFT_2805 at 108.780 kb on + strand, within EX28DRAFT_2805 at 108.781 kb on - strand, within EX28DRAFT_2805 at 109.075 kb on + strand, within EX28DRAFT_2805 at 109.258 kb on - strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.404 kb on + strand, within EX28DRAFT_2805 at 109.417 kb on - strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.426 kb on + strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805 at 109.427 kb on - strand, within EX28DRAFT_2805 at 109.549 kb on - strand at 109.549 kb on - strand at 109.628 kb on - strand at 109.630 kb on + strand at 109.630 kb on + strand at 109.631 kb on - strand at 109.631 kb on - strand at 109.631 kb on - strand at 109.663 kb on + strand at 110.137 kb on + strand, within EX28DRAFT_2806 at 110.258 kb on - strand, within EX28DRAFT_2806 at 110.491 kb on - strand, within EX28DRAFT_2806 at 110.538 kb on + strand, within EX28DRAFT_2806 at 110.538 kb on + strand, within EX28DRAFT_2806
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 107,673 + EX28DRAFT_2803 0.88 +0.6 107,673 + EX28DRAFT_2803 0.88 +0.2 107,674 - EX28DRAFT_2803 0.88 +0.7 107,911 + +0.2 107,912 - +0.0 107,928 + +0.3 107,928 + +0.7 108,117 + EX28DRAFT_2804 0.34 -0.9 108,117 + EX28DRAFT_2804 0.34 +0.6 108,118 - EX28DRAFT_2804 0.34 -0.0 108,145 - EX28DRAFT_2804 0.39 +1.0 108,145 - EX28DRAFT_2804 0.39 +0.5 108,147 + EX28DRAFT_2804 0.39 +0.2 108,229 - EX28DRAFT_2804 0.54 -0.6 108,229 - EX28DRAFT_2804 0.54 +0.1 108,229 - EX28DRAFT_2804 0.54 +0.2 108,254 + EX28DRAFT_2804 0.59 +0.0 108,320 + EX28DRAFT_2804 0.71 -2.2 108,327 - EX28DRAFT_2804 0.72 +0.3 108,432 - -0.0 108,449 + -0.7 108,450 - -1.0 108,467 + -0.2 108,468 - +0.5 108,468 - +0.0 108,495 + +1.2 108,496 - -0.9 108,502 - -0.7 108,591 + -0.8 108,591 + +0.2 108,591 + +0.5 108,592 - +0.0 108,682 + -0.8 108,682 + -0.4 108,682 + -0.3 108,682 + -0.2 108,752 - EX28DRAFT_2805 0.14 +0.7 108,780 + EX28DRAFT_2805 0.16 -0.9 108,781 - EX28DRAFT_2805 0.16 -2.1 109,075 + EX28DRAFT_2805 0.45 -0.6 109,258 - EX28DRAFT_2805 0.64 -0.7 109,404 + EX28DRAFT_2805 0.78 -0.8 109,404 + EX28DRAFT_2805 0.78 +0.4 109,417 - EX28DRAFT_2805 0.79 +0.4 109,426 + EX28DRAFT_2805 0.80 -2.3 109,426 + EX28DRAFT_2805 0.80 -1.7 109,427 - EX28DRAFT_2805 0.80 -0.6 109,427 - EX28DRAFT_2805 0.80 -0.4 109,549 - -0.9 109,549 - -0.8 109,628 - -0.1 109,630 + -0.5 109,630 + +0.2 109,631 - +0.2 109,631 - -0.1 109,631 - -0.3 109,663 + +0.1 110,137 + EX28DRAFT_2806 0.20 +0.2 110,258 - EX28DRAFT_2806 0.29 +2.2 110,491 - EX28DRAFT_2806 0.45 -0.3 110,538 + EX28DRAFT_2806 0.48 +0.3 110,538 + EX28DRAFT_2806 0.48 -0.6
Or see this region's nucleotide sequence