Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2800 and EX28DRAFT_2801 overlap by 56 nucleotides EX28DRAFT_2801 and EX28DRAFT_2802 are separated by 293 nucleotides EX28DRAFT_2802 and EX28DRAFT_2803 are separated by 1 nucleotides
EX28DRAFT_2800: EX28DRAFT_2800 - Pyridine nucleotide-disulphide oxidoreductase, at 103,104 to 104,237
_2800
EX28DRAFT_2801: EX28DRAFT_2801 - hypothetical protein, at 104,182 to 104,394
_2801
EX28DRAFT_2802: EX28DRAFT_2802 - high-affinity nickel-transporter, HoxN/HupN/NixA family, at 104,688 to 105,710
_2802
EX28DRAFT_2803: EX28DRAFT_2803 - [NiFe] hydrogenase maturation protein HypF, at 105,712 to 107,928
_2803
Position (kb) 104
105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 103.874 kb on - strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 103.877 kb on + strand, within EX28DRAFT_2800 at 104.063 kb on - strand, within EX28DRAFT_2800 at 104.227 kb on + strand at 104.287 kb on - strand, within EX28DRAFT_2801 at 104.311 kb on - strand, within EX28DRAFT_2801 at 104.314 kb on - strand, within EX28DRAFT_2801 at 104.697 kb on + strand at 104.697 kb on + strand at 104.697 kb on + strand at 104.698 kb on - strand at 104.929 kb on + strand, within EX28DRAFT_2802 at 104.929 kb on + strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.152 kb on - strand, within EX28DRAFT_2802 at 105.167 kb on + strand, within EX28DRAFT_2802 at 105.714 kb on - strand at 105.810 kb on + strand at 105.810 kb on + strand at 105.824 kb on + strand at 106.373 kb on + strand, within EX28DRAFT_2803 at 106.373 kb on + strand, within EX28DRAFT_2803
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 103,874 - EX28DRAFT_2800 0.68 +0.5 103,877 + EX28DRAFT_2800 0.68 -0.3 103,877 + EX28DRAFT_2800 0.68 +0.6 104,063 - EX28DRAFT_2800 0.85 -0.6 104,227 + -0.7 104,287 - EX28DRAFT_2801 0.49 +0.9 104,311 - EX28DRAFT_2801 0.61 +0.2 104,314 - EX28DRAFT_2801 0.62 +0.0 104,697 + +0.5 104,697 + +0.7 104,697 + -0.7 104,698 - +2.6 104,929 + EX28DRAFT_2802 0.24 -0.8 104,929 + EX28DRAFT_2802 0.24 -0.2 105,152 - EX28DRAFT_2802 0.45 -0.3 105,152 - EX28DRAFT_2802 0.45 +0.1 105,152 - EX28DRAFT_2802 0.45 +0.1 105,152 - EX28DRAFT_2802 0.45 -0.3 105,152 - EX28DRAFT_2802 0.45 -0.6 105,152 - EX28DRAFT_2802 0.45 -4.1 105,152 - EX28DRAFT_2802 0.45 -0.8 105,167 + EX28DRAFT_2802 0.47 -0.4 105,714 - +0.3 105,810 + +0.5 105,810 + -0.1 105,824 + -1.0 106,373 + EX28DRAFT_2803 0.30 -0.6 106,373 + EX28DRAFT_2803 0.30 +0.0
Or see this region's nucleotide sequence