Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2793 and EX28DRAFT_2794 are separated by 14 nucleotides EX28DRAFT_2794 and EX28DRAFT_2795 are separated by 67 nucleotides EX28DRAFT_2795 and EX28DRAFT_2796 are separated by 63 nucleotides EX28DRAFT_2796 and EX28DRAFT_2797 overlap by 8 nucleotides
EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945
_2793
EX28DRAFT_2794: EX28DRAFT_2794 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 96,960 to 97,739
_2794
EX28DRAFT_2795: EX28DRAFT_2795 - Glucitol operon activator, at 97,807 to 98,166
_2795
EX28DRAFT_2796: EX28DRAFT_2796 - transcriptional regulator, DeoR family, at 98,230 to 99,003
_2796
EX28DRAFT_2797: EX28DRAFT_2797 - KpsF/GutQ family protein, at 98,996 to 99,961
_2797
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1 at 96.943 kb on + strand at 96.943 kb on + strand at 97.000 kb on + strand at 97.000 kb on + strand at 97.218 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.409 kb on + strand, within EX28DRAFT_2794 at 97.410 kb on - strand, within EX28DRAFT_2794 at 97.558 kb on - strand, within EX28DRAFT_2794 at 97.602 kb on + strand, within EX28DRAFT_2794 at 97.602 kb on + strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.603 kb on - strand, within EX28DRAFT_2794 at 97.638 kb on + strand, within EX28DRAFT_2794 at 97.639 kb on - strand, within EX28DRAFT_2794 at 97.690 kb on - strand at 97.953 kb on + strand, within EX28DRAFT_2795 at 98.025 kb on + strand, within EX28DRAFT_2795 at 98.026 kb on - strand, within EX28DRAFT_2795 at 98.087 kb on + strand, within EX28DRAFT_2795 at 98.214 kb on - strand at 98.311 kb on + strand, within EX28DRAFT_2796 at 98.337 kb on - strand, within EX28DRAFT_2796 at 98.352 kb on - strand, within EX28DRAFT_2796 at 98.387 kb on - strand, within EX28DRAFT_2796 at 98.907 kb on + strand, within EX28DRAFT_2796
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 96,943 + -1.0 96,943 + -2.6 97,000 + +0.8 97,000 + +0.6 97,218 + EX28DRAFT_2794 0.33 -1.5 97,409 + EX28DRAFT_2794 0.58 +0.5 97,409 + EX28DRAFT_2794 0.58 +0.0 97,409 + EX28DRAFT_2794 0.58 -0.4 97,410 - EX28DRAFT_2794 0.58 +0.5 97,558 - EX28DRAFT_2794 0.77 -0.3 97,602 + EX28DRAFT_2794 0.82 -0.1 97,602 + EX28DRAFT_2794 0.82 -0.5 97,603 - EX28DRAFT_2794 0.82 +0.5 97,603 - EX28DRAFT_2794 0.82 +0.3 97,603 - EX28DRAFT_2794 0.82 -2.0 97,603 - EX28DRAFT_2794 0.82 -0.2 97,638 + EX28DRAFT_2794 0.87 +0.6 97,639 - EX28DRAFT_2794 0.87 +0.4 97,690 - -1.0 97,953 + EX28DRAFT_2795 0.41 -0.8 98,025 + EX28DRAFT_2795 0.61 -1.4 98,026 - EX28DRAFT_2795 0.61 -0.3 98,087 + EX28DRAFT_2795 0.78 +1.1 98,214 - +0.0 98,311 + EX28DRAFT_2796 0.10 -1.0 98,337 - EX28DRAFT_2796 0.14 -0.9 98,352 - EX28DRAFT_2796 0.16 -1.6 98,387 - EX28DRAFT_2796 0.20 -1.7 98,907 + EX28DRAFT_2796 0.87 -0.3
Or see this region's nucleotide sequence