Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2790 and EX28DRAFT_2791 are separated by 252 nucleotides EX28DRAFT_2791 and EX28DRAFT_2792 overlap by 4 nucleotides EX28DRAFT_2792 and EX28DRAFT_2793 are separated by 12 nucleotides
EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798
_2790
EX28DRAFT_2791: EX28DRAFT_2791 - PTS system, glucitol/sorbitol-specific, IIC component, at 95,051 to 95,614
_2791
EX28DRAFT_2792: EX28DRAFT_2792 - PTS system, glucitol/sorbitol-specific, IIBC component, at 95,611 to 96,570
_2792
EX28DRAFT_2793: EX28DRAFT_2793 - Phosphotransferase system sorbitol-specific component IIA, at 96,583 to 96,945
_2793
Position (kb) 95
96 Strain fitness (log2 ratio) -2
-1
0
1 at 94.076 kb on - strand, within EX28DRAFT_2790 at 94.105 kb on - strand, within EX28DRAFT_2790 at 94.111 kb on + strand, within EX28DRAFT_2790 at 94.111 kb on + strand, within EX28DRAFT_2790 at 94.112 kb on - strand, within EX28DRAFT_2790 at 94.113 kb on + strand, within EX28DRAFT_2790 at 94.233 kb on + strand, within EX28DRAFT_2790 at 94.234 kb on - strand, within EX28DRAFT_2790 at 94.234 kb on - strand, within EX28DRAFT_2790 at 94.234 kb on - strand, within EX28DRAFT_2790 at 94.251 kb on + strand, within EX28DRAFT_2790 at 94.252 kb on - strand, within EX28DRAFT_2790 at 94.255 kb on + strand, within EX28DRAFT_2790 at 94.441 kb on + strand, within EX28DRAFT_2790 at 94.442 kb on - strand, within EX28DRAFT_2790 at 94.442 kb on - strand, within EX28DRAFT_2790 at 94.660 kb on + strand, within EX28DRAFT_2790 at 94.660 kb on + strand, within EX28DRAFT_2790 at 94.661 kb on - strand, within EX28DRAFT_2790 at 94.661 kb on - strand, within EX28DRAFT_2790 at 94.738 kb on + strand at 94.739 kb on - strand at 94.741 kb on + strand at 94.741 kb on + strand at 94.742 kb on - strand at 94.833 kb on - strand at 94.835 kb on - strand at 94.835 kb on - strand at 95.334 kb on - strand, within EX28DRAFT_2791 at 95.346 kb on - strand, within EX28DRAFT_2791 at 95.346 kb on - strand, within EX28DRAFT_2791 at 95.363 kb on + strand, within EX28DRAFT_2791 at 95.486 kb on + strand, within EX28DRAFT_2791 at 95.486 kb on + strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.487 kb on - strand, within EX28DRAFT_2791 at 95.696 kb on - strand at 95.696 kb on - strand at 95.845 kb on - strand, within EX28DRAFT_2792 at 95.845 kb on - strand, within EX28DRAFT_2792 at 95.878 kb on - strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.932 kb on + strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 95.933 kb on - strand, within EX28DRAFT_2792 at 96.011 kb on - strand, within EX28DRAFT_2792 at 96.150 kb on + strand, within EX28DRAFT_2792 at 96.406 kb on - strand, within EX28DRAFT_2792 at 96.558 kb on + strand at 96.568 kb on + strand at 96.595 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 94,076 - EX28DRAFT_2790 0.34 +0.3 94,105 - EX28DRAFT_2790 0.37 -1.1 94,111 + EX28DRAFT_2790 0.38 +0.0 94,111 + EX28DRAFT_2790 0.38 -0.1 94,112 - EX28DRAFT_2790 0.38 +1.1 94,113 + EX28DRAFT_2790 0.38 +0.3 94,233 + EX28DRAFT_2790 0.49 -0.2 94,234 - EX28DRAFT_2790 0.49 -0.3 94,234 - EX28DRAFT_2790 0.49 +0.3 94,234 - EX28DRAFT_2790 0.49 +0.0 94,251 + EX28DRAFT_2790 0.50 -0.3 94,252 - EX28DRAFT_2790 0.50 +0.1 94,255 + EX28DRAFT_2790 0.51 -0.9 94,441 + EX28DRAFT_2790 0.67 +0.2 94,442 - EX28DRAFT_2790 0.68 +0.8 94,442 - EX28DRAFT_2790 0.68 -2.3 94,660 + EX28DRAFT_2790 0.87 -1.2 94,660 + EX28DRAFT_2790 0.87 +0.1 94,661 - EX28DRAFT_2790 0.87 +1.3 94,661 - EX28DRAFT_2790 0.87 -0.3 94,738 + +0.0 94,739 - +0.3 94,741 + -1.6 94,741 + +0.0 94,742 - +0.6 94,833 - -0.5 94,835 - +1.1 94,835 - -0.2 95,334 - EX28DRAFT_2791 0.50 -0.5 95,346 - EX28DRAFT_2791 0.52 -0.6 95,346 - EX28DRAFT_2791 0.52 +0.4 95,363 + EX28DRAFT_2791 0.55 +0.6 95,486 + EX28DRAFT_2791 0.77 +0.0 95,486 + EX28DRAFT_2791 0.77 -1.6 95,487 - EX28DRAFT_2791 0.77 -1.6 95,487 - EX28DRAFT_2791 0.77 -0.0 95,487 - EX28DRAFT_2791 0.77 -0.5 95,696 - +0.4 95,696 - -1.8 95,845 - EX28DRAFT_2792 0.24 +0.8 95,845 - EX28DRAFT_2792 0.24 -0.5 95,878 - EX28DRAFT_2792 0.28 +0.2 95,932 + EX28DRAFT_2792 0.33 -0.2 95,932 + EX28DRAFT_2792 0.33 -0.3 95,932 + EX28DRAFT_2792 0.33 +0.9 95,933 - EX28DRAFT_2792 0.34 +1.0 95,933 - EX28DRAFT_2792 0.34 -1.0 95,933 - EX28DRAFT_2792 0.34 +0.5 96,011 - EX28DRAFT_2792 0.42 +0.0 96,150 + EX28DRAFT_2792 0.56 -0.4 96,406 - EX28DRAFT_2792 0.83 -0.9 96,558 + +0.2 96,568 + -1.8 96,595 + +0.1
Or see this region's nucleotide sequence