Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2789

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2787 and EX28DRAFT_2788 are separated by 35 nucleotidesEX28DRAFT_2788 and EX28DRAFT_2789 overlap by 4 nucleotidesEX28DRAFT_2789 and EX28DRAFT_2790 are separated by 269 nucleotides EX28DRAFT_2787: EX28DRAFT_2787 - ABC-type metal ion transport system, periplasmic component/surface adhesin, at 91,025 to 91,882 _2787 EX28DRAFT_2788: EX28DRAFT_2788 - ABC-type Mn2+/Zn2+ transport systems, permease components, at 91,918 to 92,778 _2788 EX28DRAFT_2789: EX28DRAFT_2789 - ABC-type Mn/Zn transport systems, ATPase component, at 92,775 to 93,428 _2789 EX28DRAFT_2790: EX28DRAFT_2790 - lytic murein transglycosylase B, at 93,698 to 94,798 _2790 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 91.895 kb on - strandat 91.977 kb on + strandat 91.978 kb on - strandat 91.978 kb on - strandat 92.104 kb on + strand, within EX28DRAFT_2788at 92.334 kb on + strand, within EX28DRAFT_2788at 92.335 kb on - strand, within EX28DRAFT_2788at 92.335 kb on - strand, within EX28DRAFT_2788at 92.335 kb on - strand, within EX28DRAFT_2788at 92.335 kb on - strand, within EX28DRAFT_2788at 92.335 kb on - strand, within EX28DRAFT_2788at 92.465 kb on + strand, within EX28DRAFT_2788at 92.539 kb on - strand, within EX28DRAFT_2788at 92.583 kb on + strand, within EX28DRAFT_2788at 92.598 kb on - strand, within EX28DRAFT_2788at 92.734 kb on - strandat 92.900 kb on + strand, within EX28DRAFT_2789at 92.900 kb on + strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.901 kb on - strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.902 kb on + strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.903 kb on - strand, within EX28DRAFT_2789at 92.957 kb on + strand, within EX28DRAFT_2789at 93.165 kb on + strand, within EX28DRAFT_2789at 93.166 kb on - strand, within EX28DRAFT_2789at 93.166 kb on - strand, within EX28DRAFT_2789at 93.168 kb on + strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.169 kb on - strand, within EX28DRAFT_2789at 93.177 kb on + strand, within EX28DRAFT_2789at 93.178 kb on - strand, within EX28DRAFT_2789at 93.279 kb on - strand, within EX28DRAFT_2789at 93.298 kb on - strand, within EX28DRAFT_2789at 93.380 kb on + strandat 93.555 kb on + strandat 93.555 kb on + strandat 93.560 kb on + strandat 93.561 kb on - strandat 93.561 kb on - strandat 93.587 kb on + strandat 93.588 kb on - strandat 93.588 kb on - strandat 93.636 kb on + strandat 93.637 kb on - strandat 93.689 kb on + strandat 93.690 kb on - strandat 93.790 kb on + strandat 93.791 kb on - strandat 93.831 kb on + strand, within EX28DRAFT_2790at 93.936 kb on + strand, within EX28DRAFT_2790at 93.937 kb on - strand, within EX28DRAFT_2790at 94.029 kb on + strand, within EX28DRAFT_2790at 94.076 kb on - strand, within EX28DRAFT_2790at 94.105 kb on - strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.111 kb on + strand, within EX28DRAFT_2790at 94.112 kb on - strand, within EX28DRAFT_2790at 94.113 kb on + strand, within EX28DRAFT_2790at 94.233 kb on + strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.234 kb on - strand, within EX28DRAFT_2790at 94.251 kb on + strand, within EX28DRAFT_2790at 94.252 kb on - strand, within EX28DRAFT_2790at 94.255 kb on + strand, within EX28DRAFT_2790

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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91,895 - -0.7
91,977 + +1.0
91,978 - +0.4
91,978 - +0.0
92,104 + EX28DRAFT_2788 0.22 -0.7
92,334 + EX28DRAFT_2788 0.48 -0.3
92,335 - EX28DRAFT_2788 0.48 -0.1
92,335 - EX28DRAFT_2788 0.48 -0.2
92,335 - EX28DRAFT_2788 0.48 -0.5
92,335 - EX28DRAFT_2788 0.48 -1.8
92,335 - EX28DRAFT_2788 0.48 -1.1
92,465 + EX28DRAFT_2788 0.64 -0.8
92,539 - EX28DRAFT_2788 0.72 -2.0
92,583 + EX28DRAFT_2788 0.77 -0.5
92,598 - EX28DRAFT_2788 0.79 +0.2
92,734 - -0.2
92,900 + EX28DRAFT_2789 0.19 -0.3
92,900 + EX28DRAFT_2789 0.19 -0.1
92,901 - EX28DRAFT_2789 0.19 +0.2
92,901 - EX28DRAFT_2789 0.19 +0.2
92,901 - EX28DRAFT_2789 0.19 -0.2
92,902 + EX28DRAFT_2789 0.19 +2.2
92,902 + EX28DRAFT_2789 0.19 -2.4
92,902 + EX28DRAFT_2789 0.19 +0.1
92,902 + EX28DRAFT_2789 0.19 +0.3
92,902 + EX28DRAFT_2789 0.19 +0.6
92,902 + EX28DRAFT_2789 0.19 +0.4
92,902 + EX28DRAFT_2789 0.19 +0.3
92,903 - EX28DRAFT_2789 0.20 -0.1
92,903 - EX28DRAFT_2789 0.20 -0.5
92,903 - EX28DRAFT_2789 0.20 +0.5
92,903 - EX28DRAFT_2789 0.20 -0.1
92,903 - EX28DRAFT_2789 0.20 -0.1
92,903 - EX28DRAFT_2789 0.20 +1.0
92,903 - EX28DRAFT_2789 0.20 -0.3
92,903 - EX28DRAFT_2789 0.20 +0.4
92,903 - EX28DRAFT_2789 0.20 +0.6
92,903 - EX28DRAFT_2789 0.20 -0.2
92,903 - EX28DRAFT_2789 0.20 +0.1
92,903 - EX28DRAFT_2789 0.20 +0.3
92,903 - EX28DRAFT_2789 0.20 +0.1
92,903 - EX28DRAFT_2789 0.20 +0.1
92,903 - EX28DRAFT_2789 0.20 -0.4
92,903 - EX28DRAFT_2789 0.20 -0.1
92,957 + EX28DRAFT_2789 0.28 +2.3
93,165 + EX28DRAFT_2789 0.60 +1.2
93,166 - EX28DRAFT_2789 0.60 +0.0
93,166 - EX28DRAFT_2789 0.60 -0.2
93,168 + EX28DRAFT_2789 0.60 +0.2
93,169 - EX28DRAFT_2789 0.60 +0.9
93,169 - EX28DRAFT_2789 0.60 +0.5
93,169 - EX28DRAFT_2789 0.60 +1.1
93,169 - EX28DRAFT_2789 0.60 -0.0
93,169 - EX28DRAFT_2789 0.60 +0.5
93,177 + EX28DRAFT_2789 0.61 -0.1
93,178 - EX28DRAFT_2789 0.62 -0.1
93,279 - EX28DRAFT_2789 0.77 -0.8
93,298 - EX28DRAFT_2789 0.80 +0.3
93,380 + -0.2
93,555 + +1.5
93,555 + -0.4
93,560 + -0.3
93,561 - -0.1
93,561 - +1.0
93,587 + +0.7
93,588 - -0.6
93,588 - +0.3
93,636 + -0.6
93,637 - +0.3
93,689 + -0.0
93,690 - +0.6
93,790 + -0.6
93,791 - -0.6
93,831 + EX28DRAFT_2790 0.12 +0.4
93,936 + EX28DRAFT_2790 0.22 -0.0
93,937 - EX28DRAFT_2790 0.22 +0.5
94,029 + EX28DRAFT_2790 0.30 -0.1
94,076 - EX28DRAFT_2790 0.34 +0.3
94,105 - EX28DRAFT_2790 0.37 -1.1
94,111 + EX28DRAFT_2790 0.38 +0.0
94,111 + EX28DRAFT_2790 0.38 -0.1
94,112 - EX28DRAFT_2790 0.38 +1.1
94,113 + EX28DRAFT_2790 0.38 +0.3
94,233 + EX28DRAFT_2790 0.49 -0.2
94,234 - EX28DRAFT_2790 0.49 -0.3
94,234 - EX28DRAFT_2790 0.49 +0.3
94,234 - EX28DRAFT_2790 0.49 +0.0
94,251 + EX28DRAFT_2790 0.50 -0.3
94,252 - EX28DRAFT_2790 0.50 +0.1
94,255 + EX28DRAFT_2790 0.51 -0.9

Or see this region's nucleotide sequence