Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2784

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2783 and EX28DRAFT_2784 are separated by 131 nucleotidesEX28DRAFT_2784 and EX28DRAFT_2785 are separated by 69 nucleotides EX28DRAFT_2783: EX28DRAFT_2783 - alanyl-tRNA synthetase (EC 6.1.1.7), at 85,921 to 88,548 _2783 EX28DRAFT_2784: EX28DRAFT_2784 - Uncharacterized protein conserved in bacteria, at 88,680 to 89,180 _2784 EX28DRAFT_2785: EX28DRAFT_2785 - protein RecA, at 89,250 to 90,308 _2785 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 88.703 kb on + strandat 88.704 kb on - strandat 88.712 kb on + strandat 88.713 kb on - strandat 88.735 kb on + strand, within EX28DRAFT_2784at 88.796 kb on - strand, within EX28DRAFT_2784at 88.796 kb on - strand, within EX28DRAFT_2784at 88.799 kb on + strand, within EX28DRAFT_2784at 88.799 kb on + strand, within EX28DRAFT_2784at 88.800 kb on - strand, within EX28DRAFT_2784at 88.991 kb on - strand, within EX28DRAFT_2784at 89.014 kb on + strand, within EX28DRAFT_2784at 89.015 kb on - strand, within EX28DRAFT_2784at 89.015 kb on - strand, within EX28DRAFT_2784at 89.139 kb on + strandat 89.149 kb on + strandat 89.181 kb on - strandat 89.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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88,703 + +0.1
88,704 - +0.6
88,712 + -0.1
88,713 - -0.3
88,735 + EX28DRAFT_2784 0.11 -1.0
88,796 - EX28DRAFT_2784 0.23 -0.0
88,796 - EX28DRAFT_2784 0.23 +1.0
88,799 + EX28DRAFT_2784 0.24 -1.8
88,799 + EX28DRAFT_2784 0.24 -0.1
88,800 - EX28DRAFT_2784 0.24 +1.5
88,991 - EX28DRAFT_2784 0.62 +0.3
89,014 + EX28DRAFT_2784 0.67 +0.2
89,015 - EX28DRAFT_2784 0.67 +0.1
89,015 - EX28DRAFT_2784 0.67 -0.2
89,139 + -0.2
89,149 + -0.1
89,181 - -0.0
89,265 - +0.2

Or see this region's nucleotide sequence