Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2774 and EX28DRAFT_2775 are separated by 83 nucleotides EX28DRAFT_2775 and EX28DRAFT_2776 overlap by 4 nucleotides EX28DRAFT_2776 and EX28DRAFT_2777 are separated by 117 nucleotides EX28DRAFT_2777 and EX28DRAFT_2778 are separated by 1 nucleotides EX28DRAFT_2778 and EX28DRAFT_2779 are separated by 29 nucleotides EX28DRAFT_2779 and EX28DRAFT_2780 are separated by 29 nucleotides EX28DRAFT_2780 and EX28DRAFT_2781 are separated by 4 nucleotides EX28DRAFT_2781 and EX28DRAFT_2782 are separated by 342 nucleotides
EX28DRAFT_2774: EX28DRAFT_2774 - glutamate-cysteine ligase (EC 6.3.2.2), at 81,896 to 83,440
_2774
EX28DRAFT_2775: EX28DRAFT_2775 - Predicted membrane protein, at 83,524 to 83,952
_2775
EX28DRAFT_2776: EX28DRAFT_2776 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase, at 83,949 to 84,515
_2776
EX28DRAFT_2777: EX28DRAFT_2777 - RNA, at 84,633 to 84,764
_2777
EX28DRAFT_2778: EX28DRAFT_2778 - tRNA, at 84,766 to 84,842
_2778
EX28DRAFT_2779: EX28DRAFT_2779 - tRNA, at 84,872 to 84,948
_2779
EX28DRAFT_2780: EX28DRAFT_2780 - tRNA, at 84,978 to 85,054
_2780
EX28DRAFT_2781: EX28DRAFT_2781 - tRNA, at 85,059 to 85,151
_2781
EX28DRAFT_2782: EX28DRAFT_2782 - carbon storage regulator, CsrA, at 85,494 to 85,679
_2782
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 82.989 kb on + strand, within EX28DRAFT_2774 at 83.121 kb on + strand, within EX28DRAFT_2774 at 83.121 kb on + strand, within EX28DRAFT_2774 at 83.147 kb on - strand, within EX28DRAFT_2774 at 83.206 kb on + strand, within EX28DRAFT_2774 at 83.216 kb on - strand, within EX28DRAFT_2774 at 83.279 kb on - strand, within EX28DRAFT_2774 at 83.329 kb on + strand at 83.426 kb on + strand at 83.463 kb on + strand at 83.464 kb on - strand at 83.464 kb on - strand at 83.469 kb on + strand at 83.470 kb on - strand at 83.479 kb on - strand at 83.525 kb on + strand at 83.525 kb on + strand at 83.541 kb on + strand at 83.541 kb on + strand at 83.542 kb on - strand at 83.549 kb on - strand at 83.549 kb on - strand at 83.653 kb on + strand, within EX28DRAFT_2775 at 83.654 kb on - strand, within EX28DRAFT_2775 at 83.665 kb on + strand, within EX28DRAFT_2775 at 83.665 kb on + strand, within EX28DRAFT_2775 at 83.665 kb on + strand, within EX28DRAFT_2775 at 83.666 kb on - strand, within EX28DRAFT_2775 at 83.681 kb on - strand, within EX28DRAFT_2775 at 83.683 kb on + strand, within EX28DRAFT_2775 at 83.776 kb on - strand, within EX28DRAFT_2775 at 83.802 kb on + strand, within EX28DRAFT_2775 at 83.815 kb on + strand, within EX28DRAFT_2775 at 83.818 kb on + strand, within EX28DRAFT_2775 at 83.821 kb on + strand, within EX28DRAFT_2775 at 83.822 kb on - strand, within EX28DRAFT_2775 at 83.822 kb on - strand, within EX28DRAFT_2775 at 83.822 kb on - strand, within EX28DRAFT_2775 at 84.228 kb on + strand, within EX28DRAFT_2776 at 84.229 kb on - strand, within EX28DRAFT_2776 at 84.229 kb on - strand, within EX28DRAFT_2776 at 84.233 kb on + strand, within EX28DRAFT_2776 at 84.503 kb on - strand at 84.511 kb on + strand at 84.511 kb on + strand at 84.512 kb on - strand at 84.512 kb on - strand at 84.546 kb on + strand at 84.556 kb on + strand at 84.557 kb on - strand at 84.718 kb on + strand, within EX28DRAFT_2777 at 84.753 kb on - strand at 84.765 kb on - strand at 84.765 kb on - strand at 84.860 kb on - strand at 84.868 kb on + strand at 84.869 kb on - strand at 85.374 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 82,989 + EX28DRAFT_2774 0.71 -0.0 83,121 + EX28DRAFT_2774 0.79 +0.8 83,121 + EX28DRAFT_2774 0.79 +1.7 83,147 - EX28DRAFT_2774 0.81 -0.3 83,206 + EX28DRAFT_2774 0.85 -2.4 83,216 - EX28DRAFT_2774 0.85 +0.9 83,279 - EX28DRAFT_2774 0.90 -2.1 83,329 + +0.2 83,426 + -0.3 83,463 + +0.9 83,464 - -0.4 83,464 - +0.9 83,469 + +0.6 83,470 - +1.2 83,479 - +1.0 83,525 + +0.9 83,525 + +0.5 83,541 + +1.1 83,541 + +0.8 83,542 - +0.2 83,549 - -0.1 83,549 - -1.4 83,653 + EX28DRAFT_2775 0.30 +0.7 83,654 - EX28DRAFT_2775 0.30 -4.0 83,665 + EX28DRAFT_2775 0.33 -0.3 83,665 + EX28DRAFT_2775 0.33 +0.3 83,665 + EX28DRAFT_2775 0.33 +1.0 83,666 - EX28DRAFT_2775 0.33 -2.1 83,681 - EX28DRAFT_2775 0.37 -3.2 83,683 + EX28DRAFT_2775 0.37 +1.1 83,776 - EX28DRAFT_2775 0.59 -1.9 83,802 + EX28DRAFT_2775 0.65 +0.9 83,815 + EX28DRAFT_2775 0.68 +0.7 83,818 + EX28DRAFT_2775 0.69 +0.0 83,821 + EX28DRAFT_2775 0.69 +0.7 83,822 - EX28DRAFT_2775 0.69 -1.8 83,822 - EX28DRAFT_2775 0.69 -1.3 83,822 - EX28DRAFT_2775 0.69 -1.2 84,228 + EX28DRAFT_2776 0.49 +0.9 84,229 - EX28DRAFT_2776 0.49 +0.2 84,229 - EX28DRAFT_2776 0.49 +0.5 84,233 + EX28DRAFT_2776 0.50 +0.7 84,503 - +1.2 84,511 + +0.1 84,511 + -0.0 84,512 - -0.8 84,512 - +0.4 84,546 + -2.3 84,556 + -0.1 84,557 - -0.2 84,718 + EX28DRAFT_2777 0.64 -0.9 84,753 - +0.3 84,765 - +0.4 84,765 - -0.1 84,860 - -0.6 84,868 + -1.8 84,869 - -0.7 85,374 + -0.1
Or see this region's nucleotide sequence