Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2719 and EX28DRAFT_2720 are separated by 138 nucleotides EX28DRAFT_2720 and EX28DRAFT_2721 are separated by 103 nucleotides EX28DRAFT_2721 and EX28DRAFT_2722 overlap by 11 nucleotides EX28DRAFT_2722 and EX28DRAFT_2723 are separated by 156 nucleotides
EX28DRAFT_2719: EX28DRAFT_2719 - DNA repair protein RecN, at 23,359 to 25,020
_2719
EX28DRAFT_2720: EX28DRAFT_2720 - Small protein A (tmRNA-binding), at 25,159 to 25,497
_2720
EX28DRAFT_2721: EX28DRAFT_2721 - Uncharacterized protein conserved in bacteria, at 25,601 to 25,888
_2721
EX28DRAFT_2722: EX28DRAFT_2722 - Oligoketide cyclase/lipid transport protein, at 25,878 to 26,315
_2722
EX28DRAFT_2723: EX28DRAFT_2723 - SsrA-binding protein, at 26,472 to 26,954
_2723
Position (kb)
25
26 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 24.834 kb on - strand, within EX28DRAFT_2719 at 25.045 kb on - strand at 25.094 kb on + strand at 25.095 kb on - strand at 25.108 kb on + strand at 25.109 kb on - strand at 25.111 kb on + strand at 25.111 kb on + strand at 25.111 kb on + strand at 25.111 kb on + strand at 25.111 kb on + strand at 25.112 kb on - strand at 25.115 kb on + strand at 25.116 kb on - strand at 25.116 kb on - strand at 25.267 kb on + strand, within EX28DRAFT_2720 at 25.268 kb on - strand, within EX28DRAFT_2720 at 25.268 kb on - strand, within EX28DRAFT_2720 at 25.268 kb on - strand, within EX28DRAFT_2720 at 25.268 kb on - strand, within EX28DRAFT_2720 at 25.330 kb on - strand, within EX28DRAFT_2720 at 25.381 kb on + strand, within EX28DRAFT_2720 at 25.381 kb on + strand, within EX28DRAFT_2720 at 25.381 kb on + strand, within EX28DRAFT_2720 at 25.381 kb on + strand, within EX28DRAFT_2720 at 25.382 kb on - strand, within EX28DRAFT_2720 at 25.382 kb on - strand, within EX28DRAFT_2720 at 25.382 kb on - strand, within EX28DRAFT_2720 at 25.382 kb on - strand, within EX28DRAFT_2720 at 25.385 kb on + strand, within EX28DRAFT_2720 at 25.385 kb on + strand, within EX28DRAFT_2720 at 25.386 kb on - strand, within EX28DRAFT_2720 at 25.495 kb on + strand at 25.496 kb on - strand at 25.602 kb on + strand at 25.602 kb on + strand at 25.603 kb on - strand at 25.606 kb on + strand at 25.837 kb on - strand, within EX28DRAFT_2721 at 25.858 kb on - strand, within EX28DRAFT_2721 at 25.863 kb on - strand at 25.863 kb on - strand at 25.868 kb on + strand at 25.868 kb on + strand at 25.891 kb on + strand at 26.350 kb on - strand at 26.356 kb on + strand at 26.356 kb on + strand at 26.357 kb on - strand at 26.394 kb on + strand at 26.399 kb on + strand at 26.472 kb on - strand at 26.634 kb on + strand, within EX28DRAFT_2723 at 26.634 kb on + strand, within EX28DRAFT_2723 at 26.710 kb on - strand, within EX28DRAFT_2723
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 24,834 - EX28DRAFT_2719 0.89 -0.1 25,045 - -0.1 25,094 + -0.1 25,095 - +0.1 25,108 + -0.1 25,109 - -1.5 25,111 + -0.6 25,111 + +0.7 25,111 + -2.0 25,111 + -0.0 25,111 + +0.9 25,112 - -1.2 25,115 + -3.4 25,116 - -2.7 25,116 - -1.0 25,267 + EX28DRAFT_2720 0.32 -0.4 25,268 - EX28DRAFT_2720 0.32 -2.1 25,268 - EX28DRAFT_2720 0.32 -0.8 25,268 - EX28DRAFT_2720 0.32 -3.8 25,268 - EX28DRAFT_2720 0.32 -1.2 25,330 - EX28DRAFT_2720 0.50 -3.9 25,381 + EX28DRAFT_2720 0.65 -0.1 25,381 + EX28DRAFT_2720 0.65 -1.2 25,381 + EX28DRAFT_2720 0.65 +0.9 25,381 + EX28DRAFT_2720 0.65 -0.9 25,382 - EX28DRAFT_2720 0.66 -1.5 25,382 - EX28DRAFT_2720 0.66 -1.5 25,382 - EX28DRAFT_2720 0.66 -2.8 25,382 - EX28DRAFT_2720 0.66 -1.0 25,385 + EX28DRAFT_2720 0.67 -0.1 25,385 + EX28DRAFT_2720 0.67 -0.6 25,386 - EX28DRAFT_2720 0.67 -0.5 25,495 + -0.9 25,496 - -0.4 25,602 + -1.0 25,602 + -2.1 25,603 - -0.9 25,606 + -0.4 25,837 - EX28DRAFT_2721 0.82 -3.2 25,858 - EX28DRAFT_2721 0.89 -2.6 25,863 - -1.3 25,863 - -0.7 25,868 + -1.1 25,868 + -1.1 25,891 + -2.1 26,350 - -0.6 26,356 + +0.2 26,356 + -1.0 26,357 - +0.0 26,394 + -0.3 26,399 + -0.7 26,472 - +0.8 26,634 + EX28DRAFT_2723 0.34 +0.1 26,634 + EX28DRAFT_2723 0.34 +0.6 26,710 - EX28DRAFT_2723 0.49 -2.5
Or see this region's nucleotide sequence