Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2721

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2719 and EX28DRAFT_2720 are separated by 138 nucleotidesEX28DRAFT_2720 and EX28DRAFT_2721 are separated by 103 nucleotidesEX28DRAFT_2721 and EX28DRAFT_2722 overlap by 11 nucleotidesEX28DRAFT_2722 and EX28DRAFT_2723 are separated by 156 nucleotides EX28DRAFT_2719: EX28DRAFT_2719 - DNA repair protein RecN, at 23,359 to 25,020 _2719 EX28DRAFT_2720: EX28DRAFT_2720 - Small protein A (tmRNA-binding), at 25,159 to 25,497 _2720 EX28DRAFT_2721: EX28DRAFT_2721 - Uncharacterized protein conserved in bacteria, at 25,601 to 25,888 _2721 EX28DRAFT_2722: EX28DRAFT_2722 - Oligoketide cyclase/lipid transport protein, at 25,878 to 26,315 _2722 EX28DRAFT_2723: EX28DRAFT_2723 - SsrA-binding protein, at 26,472 to 26,954 _2723 Position (kb) 25 26Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 24.834 kb on - strand, within EX28DRAFT_2719at 25.045 kb on - strandat 25.094 kb on + strandat 25.095 kb on - strandat 25.108 kb on + strandat 25.109 kb on - strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.111 kb on + strandat 25.112 kb on - strandat 25.115 kb on + strandat 25.116 kb on - strandat 25.116 kb on - strandat 25.267 kb on + strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.268 kb on - strand, within EX28DRAFT_2720at 25.330 kb on - strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.381 kb on + strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.382 kb on - strand, within EX28DRAFT_2720at 25.385 kb on + strand, within EX28DRAFT_2720at 25.385 kb on + strand, within EX28DRAFT_2720at 25.386 kb on - strand, within EX28DRAFT_2720at 25.495 kb on + strandat 25.496 kb on - strandat 25.602 kb on + strandat 25.602 kb on + strandat 25.603 kb on - strandat 25.606 kb on + strandat 25.837 kb on - strand, within EX28DRAFT_2721at 25.858 kb on - strand, within EX28DRAFT_2721at 25.863 kb on - strandat 25.863 kb on - strandat 25.868 kb on + strandat 25.868 kb on + strandat 25.891 kb on + strandat 26.350 kb on - strandat 26.356 kb on + strandat 26.356 kb on + strandat 26.357 kb on - strandat 26.394 kb on + strandat 26.399 kb on + strandat 26.472 kb on - strandat 26.634 kb on + strand, within EX28DRAFT_2723at 26.634 kb on + strand, within EX28DRAFT_2723at 26.710 kb on - strand, within EX28DRAFT_2723

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
24,834 - EX28DRAFT_2719 0.89 -0.1
25,045 - -0.1
25,094 + -0.1
25,095 - +0.1
25,108 + -0.1
25,109 - -1.5
25,111 + -0.6
25,111 + +0.7
25,111 + -2.0
25,111 + -0.0
25,111 + +0.9
25,112 - -1.2
25,115 + -3.4
25,116 - -2.7
25,116 - -1.0
25,267 + EX28DRAFT_2720 0.32 -0.4
25,268 - EX28DRAFT_2720 0.32 -2.1
25,268 - EX28DRAFT_2720 0.32 -0.8
25,268 - EX28DRAFT_2720 0.32 -3.8
25,268 - EX28DRAFT_2720 0.32 -1.2
25,330 - EX28DRAFT_2720 0.50 -3.9
25,381 + EX28DRAFT_2720 0.65 -0.1
25,381 + EX28DRAFT_2720 0.65 -1.2
25,381 + EX28DRAFT_2720 0.65 +0.9
25,381 + EX28DRAFT_2720 0.65 -0.9
25,382 - EX28DRAFT_2720 0.66 -1.5
25,382 - EX28DRAFT_2720 0.66 -1.5
25,382 - EX28DRAFT_2720 0.66 -2.8
25,382 - EX28DRAFT_2720 0.66 -1.0
25,385 + EX28DRAFT_2720 0.67 -0.1
25,385 + EX28DRAFT_2720 0.67 -0.6
25,386 - EX28DRAFT_2720 0.67 -0.5
25,495 + -0.9
25,496 - -0.4
25,602 + -1.0
25,602 + -2.1
25,603 - -0.9
25,606 + -0.4
25,837 - EX28DRAFT_2721 0.82 -3.2
25,858 - EX28DRAFT_2721 0.89 -2.6
25,863 - -1.3
25,863 - -0.7
25,868 + -1.1
25,868 + -1.1
25,891 + -2.1
26,350 - -0.6
26,356 + +0.2
26,356 + -1.0
26,357 - +0.0
26,394 + -0.3
26,399 + -0.7
26,472 - +0.8
26,634 + EX28DRAFT_2723 0.34 +0.1
26,634 + EX28DRAFT_2723 0.34 +0.6
26,710 - EX28DRAFT_2723 0.49 -2.5

Or see this region's nucleotide sequence