Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2705 and EX28DRAFT_2706 are separated by 12 nucleotides EX28DRAFT_2706 and EX28DRAFT_2707 are separated by 2 nucleotides EX28DRAFT_2707 and EX28DRAFT_2708 are separated by 39 nucleotides EX28DRAFT_2708 and EX28DRAFT_2709 are separated by 132 nucleotides EX28DRAFT_2709 and EX28DRAFT_2710 are separated by 43 nucleotides
EX28DRAFT_2705: EX28DRAFT_2705 - diguanylate cyclase (GGDEF) domain, at 12,224 to 13,444
_2705
EX28DRAFT_2706: EX28DRAFT_2706 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 13,457 to 13,942
_2706
EX28DRAFT_2707: EX28DRAFT_2707 - Uncharacterized iron-regulated membrane protein, at 13,945 to 15,315
_2707
EX28DRAFT_2708: EX28DRAFT_2708 - Protein of unknown function (DUF2946), at 15,355 to 15,759
_2708
EX28DRAFT_2709: EX28DRAFT_2709 - ribosomal protein L19, bacterial type, at 15,892 to 16,239
_2709
EX28DRAFT_2710: EX28DRAFT_2710 - tRNA (guanine-N1)-methyltransferase, at 16,283 to 17,050
_2710
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.085 kb on - strand, within EX28DRAFT_2705 at 13.085 kb on - strand, within EX28DRAFT_2705 at 13.096 kb on + strand, within EX28DRAFT_2705 at 13.097 kb on - strand, within EX28DRAFT_2705 at 13.097 kb on - strand, within EX28DRAFT_2705 at 13.227 kb on - strand, within EX28DRAFT_2705 at 13.307 kb on - strand, within EX28DRAFT_2705 at 13.381 kb on - strand at 13.451 kb on + strand at 13.456 kb on + strand at 13.456 kb on + strand at 13.456 kb on + strand at 13.461 kb on + strand at 13.537 kb on + strand, within EX28DRAFT_2706 at 13.630 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.742 kb on + strand, within EX28DRAFT_2706 at 13.743 kb on - strand, within EX28DRAFT_2706 at 13.757 kb on + strand, within EX28DRAFT_2706 at 13.822 kb on + strand, within EX28DRAFT_2706 at 13.855 kb on - strand, within EX28DRAFT_2706 at 13.940 kb on + strand at 13.946 kb on + strand at 13.946 kb on + strand at 14.787 kb on - strand, within EX28DRAFT_2707 at 14.787 kb on - strand, within EX28DRAFT_2707 at 14.850 kb on - strand, within EX28DRAFT_2707 at 14.883 kb on + strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.884 kb on - strand, within EX28DRAFT_2707 at 14.891 kb on + strand, within EX28DRAFT_2707 at 14.934 kb on - strand, within EX28DRAFT_2707 at 14.943 kb on + strand, within EX28DRAFT_2707 at 14.983 kb on - strand, within EX28DRAFT_2707 at 15.033 kb on + strand, within EX28DRAFT_2707 at 15.200 kb on + strand at 15.200 kb on + strand at 15.201 kb on - strand at 15.310 kb on - strand at 15.533 kb on + strand, within EX28DRAFT_2708 at 15.567 kb on + strand, within EX28DRAFT_2708 at 15.748 kb on + strand at 15.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 13,085 - EX28DRAFT_2705 0.71 +0.5 13,085 - EX28DRAFT_2705 0.71 -1.1 13,096 + EX28DRAFT_2705 0.71 +0.9 13,097 - EX28DRAFT_2705 0.71 -0.6 13,097 - EX28DRAFT_2705 0.71 -0.1 13,227 - EX28DRAFT_2705 0.82 +0.2 13,307 - EX28DRAFT_2705 0.89 -0.6 13,381 - +0.6 13,451 + -0.3 13,456 + -0.7 13,456 + -0.1 13,456 + +0.5 13,461 + -0.4 13,537 + EX28DRAFT_2706 0.16 +0.4 13,630 + EX28DRAFT_2706 0.36 -0.2 13,742 + EX28DRAFT_2706 0.59 -2.1 13,742 + EX28DRAFT_2706 0.59 -0.4 13,742 + EX28DRAFT_2706 0.59 -0.2 13,743 - EX28DRAFT_2706 0.59 -0.5 13,757 + EX28DRAFT_2706 0.62 -0.4 13,822 + EX28DRAFT_2706 0.75 -0.2 13,855 - EX28DRAFT_2706 0.82 -0.1 13,940 + -0.1 13,946 + -0.9 13,946 + -0.3 14,787 - EX28DRAFT_2707 0.61 +0.9 14,787 - EX28DRAFT_2707 0.61 -0.8 14,850 - EX28DRAFT_2707 0.66 -1.7 14,883 + EX28DRAFT_2707 0.68 -2.1 14,884 - EX28DRAFT_2707 0.68 -0.9 14,884 - EX28DRAFT_2707 0.68 +0.2 14,884 - EX28DRAFT_2707 0.68 +0.7 14,891 + EX28DRAFT_2707 0.69 -0.2 14,934 - EX28DRAFT_2707 0.72 -1.4 14,943 + EX28DRAFT_2707 0.73 +0.5 14,983 - EX28DRAFT_2707 0.76 +0.1 15,033 + EX28DRAFT_2707 0.79 -1.0 15,200 + -0.2 15,200 + +0.5 15,201 - +1.4 15,310 - +0.3 15,533 + EX28DRAFT_2708 0.44 -0.9 15,567 + EX28DRAFT_2708 0.52 -0.0 15,748 + +1.0 15,812 - +0.9
Or see this region's nucleotide sequence