Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2668 and EX28DRAFT_2669 are separated by 108 nucleotides EX28DRAFT_2669 and EX28DRAFT_2670 are separated by 51 nucleotides
EX28DRAFT_2668: EX28DRAFT_2668 - Acyl-CoA dehydrogenases, at 2,704,843 to 2,707,287
_2668
EX28DRAFT_2669: EX28DRAFT_2669 - Predicted amidohydrolase, at 2,707,396 to 2,708,166
_2669
EX28DRAFT_2670: EX28DRAFT_2670 - Gamma-glutamyltransferase, at 2,708,218 to 2,709,819
_2670
Position (kb)
2707
2708
2709 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2706.397 kb on + strand, within EX28DRAFT_2668 at 2706.397 kb on + strand, within EX28DRAFT_2668 at 2706.568 kb on + strand, within EX28DRAFT_2668 at 2706.569 kb on - strand, within EX28DRAFT_2668 at 2706.660 kb on + strand, within EX28DRAFT_2668 at 2707.072 kb on - strand at 2707.144 kb on - strand at 2707.149 kb on + strand at 2707.301 kb on + strand at 2707.301 kb on + strand at 2707.348 kb on + strand at 2707.349 kb on - strand at 2707.359 kb on - strand at 2707.359 kb on - strand at 2707.359 kb on - strand at 2707.416 kb on + strand at 2707.753 kb on + strand, within EX28DRAFT_2669 at 2707.753 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.876 kb on + strand, within EX28DRAFT_2669 at 2707.877 kb on - strand, within EX28DRAFT_2669 at 2707.928 kb on + strand, within EX28DRAFT_2669 at 2707.954 kb on + strand, within EX28DRAFT_2669 at 2707.954 kb on + strand, within EX28DRAFT_2669 at 2707.955 kb on - strand, within EX28DRAFT_2669 at 2708.002 kb on + strand, within EX28DRAFT_2669 at 2708.212 kb on - strand at 2708.315 kb on + strand at 2708.377 kb on - strand at 2708.475 kb on + strand, within EX28DRAFT_2670 at 2708.476 kb on - strand, within EX28DRAFT_2670 at 2708.628 kb on + strand, within EX28DRAFT_2670 at 2708.628 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.711 kb on + strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.712 kb on - strand, within EX28DRAFT_2670 at 2708.765 kb on + strand, within EX28DRAFT_2670 at 2708.814 kb on + strand, within EX28DRAFT_2670 at 2708.850 kb on - strand, within EX28DRAFT_2670 at 2708.886 kb on + strand, within EX28DRAFT_2670 at 2708.906 kb on + strand, within EX28DRAFT_2670 at 2708.992 kb on - strand, within EX28DRAFT_2670 at 2709.098 kb on - strand, within EX28DRAFT_2670
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,706,397 + EX28DRAFT_2668 0.64 +0.3 2,706,397 + EX28DRAFT_2668 0.64 +0.8 2,706,568 + EX28DRAFT_2668 0.71 +0.7 2,706,569 - EX28DRAFT_2668 0.71 -0.2 2,706,660 + EX28DRAFT_2668 0.74 -3.1 2,707,072 - +0.3 2,707,144 - +0.4 2,707,149 + -0.4 2,707,301 + -0.1 2,707,301 + +0.5 2,707,348 + +0.1 2,707,349 - +0.2 2,707,359 - +0.2 2,707,359 - +1.2 2,707,359 - +0.9 2,707,416 + +0.4 2,707,753 + EX28DRAFT_2669 0.46 +1.0 2,707,753 + EX28DRAFT_2669 0.46 -0.4 2,707,876 + EX28DRAFT_2669 0.62 -0.1 2,707,876 + EX28DRAFT_2669 0.62 -0.2 2,707,876 + EX28DRAFT_2669 0.62 +0.3 2,707,877 - EX28DRAFT_2669 0.62 -0.3 2,707,928 + EX28DRAFT_2669 0.69 +0.9 2,707,954 + EX28DRAFT_2669 0.72 -0.4 2,707,954 + EX28DRAFT_2669 0.72 -1.0 2,707,955 - EX28DRAFT_2669 0.73 +0.1 2,708,002 + EX28DRAFT_2669 0.79 +0.8 2,708,212 - +0.2 2,708,315 + +0.1 2,708,377 - +0.2 2,708,475 + EX28DRAFT_2670 0.16 +0.9 2,708,476 - EX28DRAFT_2670 0.16 +0.1 2,708,628 + EX28DRAFT_2670 0.26 +0.8 2,708,628 + EX28DRAFT_2670 0.26 +1.9 2,708,711 + EX28DRAFT_2670 0.31 -1.5 2,708,711 + EX28DRAFT_2670 0.31 -0.5 2,708,711 + EX28DRAFT_2670 0.31 +0.2 2,708,711 + EX28DRAFT_2670 0.31 +0.8 2,708,711 + EX28DRAFT_2670 0.31 +1.8 2,708,711 + EX28DRAFT_2670 0.31 -0.2 2,708,712 - EX28DRAFT_2670 0.31 +0.0 2,708,712 - EX28DRAFT_2670 0.31 +0.5 2,708,712 - EX28DRAFT_2670 0.31 +0.1 2,708,712 - EX28DRAFT_2670 0.31 +0.3 2,708,712 - EX28DRAFT_2670 0.31 +0.6 2,708,712 - EX28DRAFT_2670 0.31 +0.6 2,708,712 - EX28DRAFT_2670 0.31 +0.4 2,708,712 - EX28DRAFT_2670 0.31 -0.3 2,708,712 - EX28DRAFT_2670 0.31 +2.1 2,708,765 + EX28DRAFT_2670 0.34 +0.2 2,708,814 + EX28DRAFT_2670 0.37 -0.1 2,708,850 - EX28DRAFT_2670 0.39 -0.8 2,708,886 + EX28DRAFT_2670 0.42 -0.2 2,708,906 + EX28DRAFT_2670 0.43 -0.8 2,708,992 - EX28DRAFT_2670 0.48 +0.1 2,709,098 - EX28DRAFT_2670 0.55 -0.3
Or see this region's nucleotide sequence