Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2665

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2664 and EX28DRAFT_2665 are separated by 298 nucleotidesEX28DRAFT_2665 and EX28DRAFT_2666 overlap by 30 nucleotidesEX28DRAFT_2666 and EX28DRAFT_2667 are separated by 48 nucleotides EX28DRAFT_2664: EX28DRAFT_2664 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 2,700,856 to 2,702,199 _2664 EX28DRAFT_2665: EX28DRAFT_2665 - Uncharacterized protein conserved in bacteria, at 2,702,498 to 2,703,238 _2665 EX28DRAFT_2666: EX28DRAFT_2666 - Predicted glutamine amidotransferase, at 2,703,209 to 2,703,976 _2666 EX28DRAFT_2667: EX28DRAFT_2667 - phosphoheptose isomerase, at 2,704,025 to 2,704,603 _2667 Position (kb) 2702 2703 2704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2701.819 kb on + strand, within EX28DRAFT_2664at 2702.193 kb on + strandat 2702.305 kb on + strandat 2702.305 kb on + strandat 2702.347 kb on - strandat 2702.347 kb on - strandat 2702.348 kb on + strandat 2702.349 kb on - strandat 2702.349 kb on - strandat 2702.353 kb on + strandat 2702.366 kb on + strandat 2702.396 kb on + strandat 2702.480 kb on + strandat 2702.481 kb on - strandat 2702.491 kb on + strandat 2702.491 kb on + strandat 2702.491 kb on + strandat 2702.492 kb on - strandat 2702.492 kb on - strandat 2702.495 kb on - strandat 2702.495 kb on - strandat 2702.495 kb on - strandat 2702.498 kb on - strandat 2702.498 kb on - strandat 2702.572 kb on + strand, within EX28DRAFT_2665at 2702.573 kb on - strand, within EX28DRAFT_2665at 2702.573 kb on - strand, within EX28DRAFT_2665at 2702.573 kb on - strand, within EX28DRAFT_2665at 2702.601 kb on - strand, within EX28DRAFT_2665at 2702.602 kb on + strand, within EX28DRAFT_2665at 2702.603 kb on - strand, within EX28DRAFT_2665at 2702.603 kb on - strand, within EX28DRAFT_2665at 2702.632 kb on + strand, within EX28DRAFT_2665at 2702.633 kb on - strand, within EX28DRAFT_2665at 2702.690 kb on + strand, within EX28DRAFT_2665at 2702.690 kb on + strand, within EX28DRAFT_2665at 2702.705 kb on - strand, within EX28DRAFT_2665at 2702.708 kb on + strand, within EX28DRAFT_2665at 2702.720 kb on - strand, within EX28DRAFT_2665at 2702.723 kb on + strand, within EX28DRAFT_2665at 2702.825 kb on + strand, within EX28DRAFT_2665at 2702.825 kb on + strand, within EX28DRAFT_2665at 2702.825 kb on + strand, within EX28DRAFT_2665at 2702.826 kb on - strand, within EX28DRAFT_2665at 2702.858 kb on + strand, within EX28DRAFT_2665at 2703.004 kb on - strand, within EX28DRAFT_2665at 2703.059 kb on + strand, within EX28DRAFT_2665at 2703.059 kb on + strand, within EX28DRAFT_2665at 2703.060 kb on - strand, within EX28DRAFT_2665at 2703.060 kb on - strand, within EX28DRAFT_2665at 2703.066 kb on - strand, within EX28DRAFT_2665at 2703.066 kb on - strand, within EX28DRAFT_2665at 2703.066 kb on - strand, within EX28DRAFT_2665at 2703.068 kb on + strand, within EX28DRAFT_2665at 2703.107 kb on + strand, within EX28DRAFT_2665at 2703.107 kb on + strand, within EX28DRAFT_2665at 2703.215 kb on + strandat 2703.236 kb on + strandat 2703.237 kb on - strandat 2703.237 kb on - strandat 2703.237 kb on - strandat 2703.435 kb on + strand, within EX28DRAFT_2666at 2703.435 kb on + strand, within EX28DRAFT_2666at 2703.504 kb on + strand, within EX28DRAFT_2666at 2703.504 kb on + strand, within EX28DRAFT_2666at 2703.504 kb on + strand, within EX28DRAFT_2666at 2703.505 kb on - strand, within EX28DRAFT_2666at 2703.634 kb on + strand, within EX28DRAFT_2666at 2703.635 kb on - strand, within EX28DRAFT_2666at 2703.664 kb on - strand, within EX28DRAFT_2666at 2703.926 kb on - strandat 2703.976 kb on + strandat 2703.976 kb on + strandat 2703.976 kb on + strandat 2703.977 kb on - strandat 2703.977 kb on - strandat 2704.024 kb on - strandat 2704.024 kb on - strandat 2704.026 kb on + strandat 2704.026 kb on + strandat 2704.027 kb on - strandat 2704.027 kb on - strandat 2704.030 kb on + strandat 2704.030 kb on + strandat 2704.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,701,819 + EX28DRAFT_2664 0.72 -1.3
2,702,193 + -0.0
2,702,305 + +0.0
2,702,305 + -0.5
2,702,347 - -0.1
2,702,347 - -0.6
2,702,348 + +0.6
2,702,349 - +1.3
2,702,349 - -2.6
2,702,353 + +0.6
2,702,366 + -0.4
2,702,396 + +0.2
2,702,480 + +2.6
2,702,481 - +0.5
2,702,491 + -0.2
2,702,491 + -0.1
2,702,491 + +0.3
2,702,492 - -0.2
2,702,492 - -0.2
2,702,495 - +0.2
2,702,495 - +1.4
2,702,495 - +0.8
2,702,498 - +0.0
2,702,498 - +0.5
2,702,572 + EX28DRAFT_2665 0.10 -1.2
2,702,573 - EX28DRAFT_2665 0.10 +0.1
2,702,573 - EX28DRAFT_2665 0.10 +0.8
2,702,573 - EX28DRAFT_2665 0.10 -4.1
2,702,601 - EX28DRAFT_2665 0.14 +0.4
2,702,602 + EX28DRAFT_2665 0.14 +0.2
2,702,603 - EX28DRAFT_2665 0.14 -0.9
2,702,603 - EX28DRAFT_2665 0.14 -0.8
2,702,632 + EX28DRAFT_2665 0.18 -0.8
2,702,633 - EX28DRAFT_2665 0.18 -0.1
2,702,690 + EX28DRAFT_2665 0.26 -0.4
2,702,690 + EX28DRAFT_2665 0.26 -0.2
2,702,705 - EX28DRAFT_2665 0.28 -0.5
2,702,708 + EX28DRAFT_2665 0.28 -0.8
2,702,720 - EX28DRAFT_2665 0.30 -0.3
2,702,723 + EX28DRAFT_2665 0.30 +0.0
2,702,825 + EX28DRAFT_2665 0.44 -1.2
2,702,825 + EX28DRAFT_2665 0.44 +0.0
2,702,825 + EX28DRAFT_2665 0.44 +1.1
2,702,826 - EX28DRAFT_2665 0.44 +0.1
2,702,858 + EX28DRAFT_2665 0.49 -0.4
2,703,004 - EX28DRAFT_2665 0.68 -0.2
2,703,059 + EX28DRAFT_2665 0.76 +0.2
2,703,059 + EX28DRAFT_2665 0.76 -0.3
2,703,060 - EX28DRAFT_2665 0.76 +0.1
2,703,060 - EX28DRAFT_2665 0.76 -0.0
2,703,066 - EX28DRAFT_2665 0.77 +0.3
2,703,066 - EX28DRAFT_2665 0.77 -0.0
2,703,066 - EX28DRAFT_2665 0.77 -0.7
2,703,068 + EX28DRAFT_2665 0.77 -0.1
2,703,107 + EX28DRAFT_2665 0.82 +0.5
2,703,107 + EX28DRAFT_2665 0.82 -0.5
2,703,215 + -1.0
2,703,236 + -0.3
2,703,237 - -1.4
2,703,237 - -0.2
2,703,237 - -0.4
2,703,435 + EX28DRAFT_2666 0.29 +0.3
2,703,435 + EX28DRAFT_2666 0.29 +0.5
2,703,504 + EX28DRAFT_2666 0.38 +0.2
2,703,504 + EX28DRAFT_2666 0.38 +0.3
2,703,504 + EX28DRAFT_2666 0.38 +0.3
2,703,505 - EX28DRAFT_2666 0.39 -0.6
2,703,634 + EX28DRAFT_2666 0.55 +0.4
2,703,635 - EX28DRAFT_2666 0.55 -0.1
2,703,664 - EX28DRAFT_2666 0.59 -4.0
2,703,926 - -0.5
2,703,976 + -0.6
2,703,976 + -0.5
2,703,976 + +1.0
2,703,977 - -0.7
2,703,977 - +0.2
2,704,024 - -0.6
2,704,024 - +0.1
2,704,026 + +1.2
2,704,026 + +0.2
2,704,027 - +0.3
2,704,027 - -0.4
2,704,030 + -1.9
2,704,030 + -0.2
2,704,031 - -0.6

Or see this region's nucleotide sequence