Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2634

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2633 and EX28DRAFT_2634 are separated by 187 nucleotidesEX28DRAFT_2634 and EX28DRAFT_2635 are separated by 6 nucleotides EX28DRAFT_2633: EX28DRAFT_2633 - Uncharacterised nucleotidyltransferase, at 2,672,314 to 2,673,429 _2633 EX28DRAFT_2634: EX28DRAFT_2634 - hypothetical protein, at 2,673,617 to 2,674,966 _2634 EX28DRAFT_2635: EX28DRAFT_2635 - Fructose-2,6-bisphosphatase, at 2,674,973 to 2,675,599 _2635 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2672.703 kb on - strand, within EX28DRAFT_2633at 2673.178 kb on + strand, within EX28DRAFT_2633at 2673.184 kb on - strand, within EX28DRAFT_2633at 2673.209 kb on - strand, within EX28DRAFT_2633at 2673.254 kb on + strand, within EX28DRAFT_2633at 2673.255 kb on - strand, within EX28DRAFT_2633at 2673.518 kb on + strandat 2673.785 kb on - strand, within EX28DRAFT_2634at 2674.046 kb on + strand, within EX28DRAFT_2634at 2674.050 kb on - strand, within EX28DRAFT_2634at 2674.050 kb on - strand, within EX28DRAFT_2634at 2674.082 kb on - strand, within EX28DRAFT_2634at 2674.100 kb on + strand, within EX28DRAFT_2634at 2674.219 kb on + strand, within EX28DRAFT_2634at 2674.343 kb on + strand, within EX28DRAFT_2634at 2674.343 kb on + strand, within EX28DRAFT_2634at 2674.343 kb on + strand, within EX28DRAFT_2634at 2674.344 kb on - strand, within EX28DRAFT_2634at 2674.354 kb on - strand, within EX28DRAFT_2634at 2674.386 kb on + strand, within EX28DRAFT_2634at 2674.387 kb on - strand, within EX28DRAFT_2634at 2674.398 kb on + strand, within EX28DRAFT_2634at 2674.399 kb on - strand, within EX28DRAFT_2634at 2674.418 kb on - strand, within EX28DRAFT_2634at 2674.418 kb on - strand, within EX28DRAFT_2634at 2674.463 kb on - strand, within EX28DRAFT_2634at 2674.474 kb on + strand, within EX28DRAFT_2634at 2674.492 kb on + strand, within EX28DRAFT_2634at 2674.521 kb on - strand, within EX28DRAFT_2634at 2674.526 kb on - strand, within EX28DRAFT_2634at 2674.526 kb on - strand, within EX28DRAFT_2634at 2674.526 kb on - strand, within EX28DRAFT_2634at 2674.528 kb on - strand, within EX28DRAFT_2634at 2674.537 kb on + strand, within EX28DRAFT_2634at 2674.537 kb on + strand, within EX28DRAFT_2634at 2674.540 kb on + strand, within EX28DRAFT_2634at 2674.540 kb on + strand, within EX28DRAFT_2634at 2674.541 kb on - strand, within EX28DRAFT_2634at 2674.564 kb on + strand, within EX28DRAFT_2634at 2674.564 kb on + strand, within EX28DRAFT_2634at 2674.682 kb on - strand, within EX28DRAFT_2634at 2674.764 kb on + strand, within EX28DRAFT_2634at 2674.798 kb on + strand, within EX28DRAFT_2634at 2674.964 kb on + strandat 2674.987 kb on - strandat 2675.131 kb on + strand, within EX28DRAFT_2635at 2675.132 kb on - strand, within EX28DRAFT_2635at 2675.238 kb on - strand, within EX28DRAFT_2635at 2675.263 kb on - strand, within EX28DRAFT_2635at 2675.274 kb on - strand, within EX28DRAFT_2635at 2675.359 kb on + strand, within EX28DRAFT_2635at 2675.359 kb on + strand, within EX28DRAFT_2635at 2675.359 kb on + strand, within EX28DRAFT_2635at 2675.359 kb on + strand, within EX28DRAFT_2635at 2675.360 kb on - strand, within EX28DRAFT_2635at 2675.443 kb on + strand, within EX28DRAFT_2635at 2675.443 kb on + strand, within EX28DRAFT_2635at 2675.444 kb on - strand, within EX28DRAFT_2635at 2675.489 kb on + strand, within EX28DRAFT_2635at 2675.511 kb on - strand, within EX28DRAFT_2635at 2675.511 kb on - strand, within EX28DRAFT_2635at 2675.542 kb on + strandat 2675.682 kb on - strandat 2675.689 kb on - strandat 2675.689 kb on - strandat 2675.697 kb on - strandat 2675.708 kb on - strandat 2675.956 kb on - strandat 2675.965 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,672,703 - EX28DRAFT_2633 0.35 -1.0
2,673,178 + EX28DRAFT_2633 0.77 -0.8
2,673,184 - EX28DRAFT_2633 0.78 -0.6
2,673,209 - EX28DRAFT_2633 0.80 -2.1
2,673,254 + EX28DRAFT_2633 0.84 -0.1
2,673,255 - EX28DRAFT_2633 0.84 +1.0
2,673,518 + -0.6
2,673,785 - EX28DRAFT_2634 0.12 -1.5
2,674,046 + EX28DRAFT_2634 0.32 -0.5
2,674,050 - EX28DRAFT_2634 0.32 -0.0
2,674,050 - EX28DRAFT_2634 0.32 -1.0
2,674,082 - EX28DRAFT_2634 0.34 -0.2
2,674,100 + EX28DRAFT_2634 0.36 -0.6
2,674,219 + EX28DRAFT_2634 0.45 -0.6
2,674,343 + EX28DRAFT_2634 0.54 -0.2
2,674,343 + EX28DRAFT_2634 0.54 -0.0
2,674,343 + EX28DRAFT_2634 0.54 +0.5
2,674,344 - EX28DRAFT_2634 0.54 -1.1
2,674,354 - EX28DRAFT_2634 0.55 -1.3
2,674,386 + EX28DRAFT_2634 0.57 +0.6
2,674,387 - EX28DRAFT_2634 0.57 -2.2
2,674,398 + EX28DRAFT_2634 0.58 -0.6
2,674,399 - EX28DRAFT_2634 0.58 -1.8
2,674,418 - EX28DRAFT_2634 0.59 -2.4
2,674,418 - EX28DRAFT_2634 0.59 -1.1
2,674,463 - EX28DRAFT_2634 0.63 -3.2
2,674,474 + EX28DRAFT_2634 0.63 -0.2
2,674,492 + EX28DRAFT_2634 0.65 -0.4
2,674,521 - EX28DRAFT_2634 0.67 -1.4
2,674,526 - EX28DRAFT_2634 0.67 -2.1
2,674,526 - EX28DRAFT_2634 0.67 -1.0
2,674,526 - EX28DRAFT_2634 0.67 -3.8
2,674,528 - EX28DRAFT_2634 0.67 -1.4
2,674,537 + EX28DRAFT_2634 0.68 +0.3
2,674,537 + EX28DRAFT_2634 0.68 -0.2
2,674,540 + EX28DRAFT_2634 0.68 -1.0
2,674,540 + EX28DRAFT_2634 0.68 -0.4
2,674,541 - EX28DRAFT_2634 0.68 +0.2
2,674,564 + EX28DRAFT_2634 0.70 -0.9
2,674,564 + EX28DRAFT_2634 0.70 -1.0
2,674,682 - EX28DRAFT_2634 0.79 +0.6
2,674,764 + EX28DRAFT_2634 0.85 +0.4
2,674,798 + EX28DRAFT_2634 0.87 +0.5
2,674,964 + -0.1
2,674,987 - -1.8
2,675,131 + EX28DRAFT_2635 0.25 -4.9
2,675,132 - EX28DRAFT_2635 0.25 -3.4
2,675,238 - EX28DRAFT_2635 0.42 -1.2
2,675,263 - EX28DRAFT_2635 0.46 -2.0
2,675,274 - EX28DRAFT_2635 0.48 -3.4
2,675,359 + EX28DRAFT_2635 0.62 -4.1
2,675,359 + EX28DRAFT_2635 0.62 -1.8
2,675,359 + EX28DRAFT_2635 0.62 -2.4
2,675,359 + EX28DRAFT_2635 0.62 -1.8
2,675,360 - EX28DRAFT_2635 0.62 -3.2
2,675,443 + EX28DRAFT_2635 0.75 -3.0
2,675,443 + EX28DRAFT_2635 0.75 -3.9
2,675,444 - EX28DRAFT_2635 0.75 -1.7
2,675,489 + EX28DRAFT_2635 0.82 -3.4
2,675,511 - EX28DRAFT_2635 0.86 -4.2
2,675,511 - EX28DRAFT_2635 0.86 -4.1
2,675,542 + -1.9
2,675,682 - +1.3
2,675,689 - -0.1
2,675,689 - +0.1
2,675,697 - +1.7
2,675,708 - +0.3
2,675,956 - -2.3
2,675,965 + +0.3

Or see this region's nucleotide sequence