Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2628 and EX28DRAFT_2629 are separated by 3 nucleotides EX28DRAFT_2629 and EX28DRAFT_2630 overlap by 8 nucleotides EX28DRAFT_2630 and EX28DRAFT_2631 are separated by 14 nucleotides
EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305
_2628
EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370
_2629
EX28DRAFT_2630: EX28DRAFT_2630 - hypothetical protein, at 2,669,363 to 2,670,073
_2630
EX28DRAFT_2631: EX28DRAFT_2631 - Protein of unknown function (DUF2817), at 2,670,088 to 2,671,146
_2631
Position (kb)
2668
2669
2670 Strain fitness (log2 ratio)
-2
-1
0
1 at 2667.309 kb on - strand, within EX28DRAFT_2628 at 2667.343 kb on - strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.391 kb on + strand, within EX28DRAFT_2628 at 2667.392 kb on - strand, within EX28DRAFT_2628 at 2667.432 kb on + strand, within EX28DRAFT_2628 at 2667.548 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.554 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.598 kb on + strand, within EX28DRAFT_2628 at 2667.688 kb on + strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.689 kb on - strand, within EX28DRAFT_2628 at 2667.721 kb on + strand, within EX28DRAFT_2628 at 2667.722 kb on - strand, within EX28DRAFT_2628 at 2667.738 kb on + strand, within EX28DRAFT_2628 at 2667.808 kb on + strand, within EX28DRAFT_2628 at 2667.834 kb on + strand, within EX28DRAFT_2628 at 2667.848 kb on - strand, within EX28DRAFT_2628 at 2667.982 kb on - strand, within EX28DRAFT_2628 at 2668.106 kb on - strand, within EX28DRAFT_2628 at 2668.158 kb on - strand, within EX28DRAFT_2628 at 2668.207 kb on + strand at 2668.794 kb on - strand, within EX28DRAFT_2629 at 2668.798 kb on - strand, within EX28DRAFT_2629 at 2669.270 kb on + strand at 2669.314 kb on - strand at 2669.377 kb on + strand at 2669.553 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.611 kb on + strand, within EX28DRAFT_2630 at 2669.730 kb on - strand, within EX28DRAFT_2630 at 2670.011 kb on - strand at 2670.030 kb on - strand at 2670.084 kb on + strand at 2670.085 kb on - strand at 2670.085 kb on - strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.097 kb on + strand at 2670.098 kb on - strand at 2670.098 kb on - strand at 2670.121 kb on - strand at 2670.153 kb on - strand at 2670.200 kb on + strand, within EX28DRAFT_2631 at 2670.205 kb on + strand, within EX28DRAFT_2631 at 2670.206 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.208 kb on - strand, within EX28DRAFT_2631 at 2670.279 kb on - strand, within EX28DRAFT_2631 at 2670.334 kb on - strand, within EX28DRAFT_2631
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,667,309 - EX28DRAFT_2628 0.13 +0.8 2,667,343 - EX28DRAFT_2628 0.16 -2.3 2,667,391 + EX28DRAFT_2628 0.21 +0.2 2,667,391 + EX28DRAFT_2628 0.21 -0.2 2,667,392 - EX28DRAFT_2628 0.21 -0.2 2,667,432 + EX28DRAFT_2628 0.24 +1.1 2,667,548 + EX28DRAFT_2628 0.34 -0.5 2,667,554 + EX28DRAFT_2628 0.35 +0.2 2,667,554 + EX28DRAFT_2628 0.35 +0.2 2,667,598 + EX28DRAFT_2628 0.39 +0.5 2,667,598 + EX28DRAFT_2628 0.39 +0.1 2,667,688 + EX28DRAFT_2628 0.46 -1.5 2,667,689 - EX28DRAFT_2628 0.46 +0.5 2,667,689 - EX28DRAFT_2628 0.46 -0.1 2,667,689 - EX28DRAFT_2628 0.46 +0.1 2,667,689 - EX28DRAFT_2628 0.46 -0.3 2,667,689 - EX28DRAFT_2628 0.46 -1.0 2,667,721 + EX28DRAFT_2628 0.49 +0.1 2,667,722 - EX28DRAFT_2628 0.49 -0.2 2,667,738 + EX28DRAFT_2628 0.51 -0.3 2,667,808 + EX28DRAFT_2628 0.57 -0.2 2,667,834 + EX28DRAFT_2628 0.59 -0.9 2,667,848 - EX28DRAFT_2628 0.60 -0.0 2,667,982 - EX28DRAFT_2628 0.72 -0.2 2,668,106 - EX28DRAFT_2628 0.83 -0.4 2,668,158 - EX28DRAFT_2628 0.87 +1.1 2,668,207 + -0.3 2,668,794 - EX28DRAFT_2629 0.46 +0.4 2,668,798 - EX28DRAFT_2629 0.46 -0.1 2,669,270 + -2.2 2,669,314 - -0.7 2,669,377 + +0.9 2,669,553 + EX28DRAFT_2630 0.27 -0.2 2,669,611 + EX28DRAFT_2630 0.35 -0.6 2,669,611 + EX28DRAFT_2630 0.35 -0.4 2,669,730 - EX28DRAFT_2630 0.52 +0.4 2,670,011 - +0.6 2,670,030 - -0.4 2,670,084 + -1.1 2,670,085 - +1.1 2,670,085 - +0.1 2,670,097 + +0.4 2,670,097 + -2.4 2,670,097 + -0.7 2,670,097 + -0.8 2,670,098 - +0.1 2,670,098 - -1.4 2,670,121 - -1.6 2,670,153 - -0.7 2,670,200 + EX28DRAFT_2631 0.11 -0.2 2,670,205 + EX28DRAFT_2631 0.11 +0.8 2,670,206 - EX28DRAFT_2631 0.11 -0.3 2,670,208 - EX28DRAFT_2631 0.11 +0.8 2,670,208 - EX28DRAFT_2631 0.11 +0.0 2,670,279 - EX28DRAFT_2631 0.18 -0.2 2,670,334 - EX28DRAFT_2631 0.23 -0.4
Or see this region's nucleotide sequence