Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2629

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2628 and EX28DRAFT_2629 are separated by 3 nucleotidesEX28DRAFT_2629 and EX28DRAFT_2630 overlap by 8 nucleotidesEX28DRAFT_2630 and EX28DRAFT_2631 are separated by 14 nucleotides EX28DRAFT_2628: EX28DRAFT_2628 - Aspartate/tyrosine/aromatic aminotransferase, at 2,667,154 to 2,668,305 _2628 EX28DRAFT_2629: EX28DRAFT_2629 - nucleoside diphosphate kinase (EC 2.7.4.6), at 2,668,309 to 2,669,370 _2629 EX28DRAFT_2630: EX28DRAFT_2630 - hypothetical protein, at 2,669,363 to 2,670,073 _2630 EX28DRAFT_2631: EX28DRAFT_2631 - Protein of unknown function (DUF2817), at 2,670,088 to 2,671,146 _2631 Position (kb) 2668 2669 2670Strain fitness (log2 ratio) -2 -1 0 1at 2667.309 kb on - strand, within EX28DRAFT_2628at 2667.343 kb on - strand, within EX28DRAFT_2628at 2667.391 kb on + strand, within EX28DRAFT_2628at 2667.391 kb on + strand, within EX28DRAFT_2628at 2667.392 kb on - strand, within EX28DRAFT_2628at 2667.432 kb on + strand, within EX28DRAFT_2628at 2667.548 kb on + strand, within EX28DRAFT_2628at 2667.554 kb on + strand, within EX28DRAFT_2628at 2667.554 kb on + strand, within EX28DRAFT_2628at 2667.598 kb on + strand, within EX28DRAFT_2628at 2667.598 kb on + strand, within EX28DRAFT_2628at 2667.688 kb on + strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.689 kb on - strand, within EX28DRAFT_2628at 2667.721 kb on + strand, within EX28DRAFT_2628at 2667.722 kb on - strand, within EX28DRAFT_2628at 2667.738 kb on + strand, within EX28DRAFT_2628at 2667.808 kb on + strand, within EX28DRAFT_2628at 2667.834 kb on + strand, within EX28DRAFT_2628at 2667.848 kb on - strand, within EX28DRAFT_2628at 2667.982 kb on - strand, within EX28DRAFT_2628at 2668.106 kb on - strand, within EX28DRAFT_2628at 2668.158 kb on - strand, within EX28DRAFT_2628at 2668.207 kb on + strandat 2668.794 kb on - strand, within EX28DRAFT_2629at 2668.798 kb on - strand, within EX28DRAFT_2629at 2669.270 kb on + strandat 2669.314 kb on - strandat 2669.377 kb on + strandat 2669.553 kb on + strand, within EX28DRAFT_2630at 2669.611 kb on + strand, within EX28DRAFT_2630at 2669.611 kb on + strand, within EX28DRAFT_2630at 2669.730 kb on - strand, within EX28DRAFT_2630at 2670.011 kb on - strandat 2670.030 kb on - strandat 2670.084 kb on + strandat 2670.085 kb on - strandat 2670.085 kb on - strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.097 kb on + strandat 2670.098 kb on - strandat 2670.098 kb on - strandat 2670.121 kb on - strandat 2670.153 kb on - strandat 2670.200 kb on + strand, within EX28DRAFT_2631at 2670.205 kb on + strand, within EX28DRAFT_2631at 2670.206 kb on - strand, within EX28DRAFT_2631at 2670.208 kb on - strand, within EX28DRAFT_2631at 2670.208 kb on - strand, within EX28DRAFT_2631at 2670.279 kb on - strand, within EX28DRAFT_2631at 2670.334 kb on - strand, within EX28DRAFT_2631

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,667,309 - EX28DRAFT_2628 0.13 +0.8
2,667,343 - EX28DRAFT_2628 0.16 -2.3
2,667,391 + EX28DRAFT_2628 0.21 +0.2
2,667,391 + EX28DRAFT_2628 0.21 -0.2
2,667,392 - EX28DRAFT_2628 0.21 -0.2
2,667,432 + EX28DRAFT_2628 0.24 +1.1
2,667,548 + EX28DRAFT_2628 0.34 -0.5
2,667,554 + EX28DRAFT_2628 0.35 +0.2
2,667,554 + EX28DRAFT_2628 0.35 +0.2
2,667,598 + EX28DRAFT_2628 0.39 +0.5
2,667,598 + EX28DRAFT_2628 0.39 +0.1
2,667,688 + EX28DRAFT_2628 0.46 -1.5
2,667,689 - EX28DRAFT_2628 0.46 +0.5
2,667,689 - EX28DRAFT_2628 0.46 -0.1
2,667,689 - EX28DRAFT_2628 0.46 +0.1
2,667,689 - EX28DRAFT_2628 0.46 -0.3
2,667,689 - EX28DRAFT_2628 0.46 -1.0
2,667,721 + EX28DRAFT_2628 0.49 +0.1
2,667,722 - EX28DRAFT_2628 0.49 -0.2
2,667,738 + EX28DRAFT_2628 0.51 -0.3
2,667,808 + EX28DRAFT_2628 0.57 -0.2
2,667,834 + EX28DRAFT_2628 0.59 -0.9
2,667,848 - EX28DRAFT_2628 0.60 -0.0
2,667,982 - EX28DRAFT_2628 0.72 -0.2
2,668,106 - EX28DRAFT_2628 0.83 -0.4
2,668,158 - EX28DRAFT_2628 0.87 +1.1
2,668,207 + -0.3
2,668,794 - EX28DRAFT_2629 0.46 +0.4
2,668,798 - EX28DRAFT_2629 0.46 -0.1
2,669,270 + -2.2
2,669,314 - -0.7
2,669,377 + +0.9
2,669,553 + EX28DRAFT_2630 0.27 -0.2
2,669,611 + EX28DRAFT_2630 0.35 -0.6
2,669,611 + EX28DRAFT_2630 0.35 -0.4
2,669,730 - EX28DRAFT_2630 0.52 +0.4
2,670,011 - +0.6
2,670,030 - -0.4
2,670,084 + -1.1
2,670,085 - +1.1
2,670,085 - +0.1
2,670,097 + +0.4
2,670,097 + -2.4
2,670,097 + -0.7
2,670,097 + -0.8
2,670,098 - +0.1
2,670,098 - -1.4
2,670,121 - -1.6
2,670,153 - -0.7
2,670,200 + EX28DRAFT_2631 0.11 -0.2
2,670,205 + EX28DRAFT_2631 0.11 +0.8
2,670,206 - EX28DRAFT_2631 0.11 -0.3
2,670,208 - EX28DRAFT_2631 0.11 +0.8
2,670,208 - EX28DRAFT_2631 0.11 +0.0
2,670,279 - EX28DRAFT_2631 0.18 -0.2
2,670,334 - EX28DRAFT_2631 0.23 -0.4

Or see this region's nucleotide sequence