Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2602 and EX28DRAFT_2603 are separated by 69 nucleotides EX28DRAFT_2603 and EX28DRAFT_2604 overlap by 4 nucleotides EX28DRAFT_2604 and EX28DRAFT_2605 overlap by 4 nucleotides EX28DRAFT_2605 and EX28DRAFT_2606 are separated by 10 nucleotides
EX28DRAFT_2602: EX28DRAFT_2602 - Putative hemolysin, at 2,637,985 to 2,639,709
_2602
EX28DRAFT_2603: EX28DRAFT_2603 - Probable taurine catabolism dioxygenase, at 2,639,779 to 2,640,630
_2603
EX28DRAFT_2604: EX28DRAFT_2604 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,640,627 to 2,641,454
_2604
EX28DRAFT_2605: EX28DRAFT_2605 - ABC-type taurine transport system, ATPase component, at 2,641,451 to 2,642,218
_2605
EX28DRAFT_2606: EX28DRAFT_2606 - taurine ABC transporter, periplasmic binding protein, at 2,642,229 to 2,643,191
_2606
Position (kb)
2640
2641
2642 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2639.667 kb on + strand at 2639.667 kb on + strand at 2639.681 kb on + strand at 2639.682 kb on - strand at 2639.849 kb on + strand at 2639.864 kb on + strand at 2640.146 kb on + strand, within EX28DRAFT_2603 at 2640.227 kb on + strand, within EX28DRAFT_2603 at 2640.325 kb on + strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.525 kb on - strand, within EX28DRAFT_2603 at 2640.592 kb on - strand at 2640.593 kb on + strand at 2640.593 kb on + strand at 2640.634 kb on - strand at 2640.634 kb on - strand at 2641.007 kb on - strand, within EX28DRAFT_2604 at 2641.134 kb on - strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.215 kb on + strand, within EX28DRAFT_2604 at 2641.216 kb on - strand, within EX28DRAFT_2604 at 2641.216 kb on - strand, within EX28DRAFT_2604 at 2641.265 kb on + strand, within EX28DRAFT_2604 at 2641.495 kb on - strand at 2641.808 kb on + strand, within EX28DRAFT_2605 at 2641.809 kb on - strand, within EX28DRAFT_2605 at 2641.844 kb on - strand, within EX28DRAFT_2605 at 2642.180 kb on - strand at 2642.187 kb on + strand at 2642.187 kb on + strand at 2642.196 kb on + strand at 2642.207 kb on - strand at 2642.210 kb on - strand at 2642.230 kb on + strand at 2642.230 kb on + strand at 2642.255 kb on - strand at 2642.377 kb on + strand, within EX28DRAFT_2606 at 2642.377 kb on + strand, within EX28DRAFT_2606 at 2642.378 kb on - strand, within EX28DRAFT_2606
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,639,667 + +0.1 2,639,667 + -0.8 2,639,681 + +0.3 2,639,682 - -1.0 2,639,849 + +0.2 2,639,864 + +0.0 2,640,146 + EX28DRAFT_2603 0.43 -0.4 2,640,227 + EX28DRAFT_2603 0.53 -0.3 2,640,325 + EX28DRAFT_2603 0.64 +0.3 2,640,525 - EX28DRAFT_2603 0.88 +0.1 2,640,525 - EX28DRAFT_2603 0.88 -0.2 2,640,525 - EX28DRAFT_2603 0.88 -1.4 2,640,592 - +0.1 2,640,593 + -1.2 2,640,593 + -3.4 2,640,634 - -0.0 2,640,634 - -1.5 2,641,007 - EX28DRAFT_2604 0.46 -1.4 2,641,134 - EX28DRAFT_2604 0.61 -1.1 2,641,215 + EX28DRAFT_2604 0.71 +0.1 2,641,215 + EX28DRAFT_2604 0.71 -0.7 2,641,215 + EX28DRAFT_2604 0.71 -1.5 2,641,216 - EX28DRAFT_2604 0.71 -0.5 2,641,216 - EX28DRAFT_2604 0.71 +1.1 2,641,265 + EX28DRAFT_2604 0.77 +1.2 2,641,495 - +0.3 2,641,808 + EX28DRAFT_2605 0.46 +0.3 2,641,809 - EX28DRAFT_2605 0.47 +0.6 2,641,844 - EX28DRAFT_2605 0.51 +0.6 2,642,180 - -0.4 2,642,187 + -0.0 2,642,187 + -0.2 2,642,196 + -0.2 2,642,207 - -0.1 2,642,210 - -0.5 2,642,230 + +0.1 2,642,230 + +0.1 2,642,255 - +0.1 2,642,377 + EX28DRAFT_2606 0.15 -0.1 2,642,377 + EX28DRAFT_2606 0.15 -0.6 2,642,378 - EX28DRAFT_2606 0.15 +0.4
Or see this region's nucleotide sequence