Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2586

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotidesEX28DRAFT_2585 and EX28DRAFT_2586 are separated by 14 nucleotidesEX28DRAFT_2586 and EX28DRAFT_2587 are separated by 102 nucleotidesEX28DRAFT_2587 and EX28DRAFT_2588 are separated by 89 nucleotides EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027 _2584 EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934 _2585 EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052 _2586 EX28DRAFT_2587: EX28DRAFT_2587 - psiF repeat, at 2,622,155 to 2,622,475 _2587 EX28DRAFT_2588: EX28DRAFT_2588 - Alkaline phosphatase, at 2,622,565 to 2,623,980 _2588 Position (kb) 2620 2621 2622 2623Strain fitness (log2 ratio) -2 -1 0 1at 2620.028 kb on - strandat 2620.028 kb on - strandat 2620.084 kb on + strandat 2620.107 kb on + strandat 2620.725 kb on + strand, within EX28DRAFT_2585at 2620.805 kb on + strand, within EX28DRAFT_2585at 2620.806 kb on - strand, within EX28DRAFT_2585at 2621.032 kb on - strandat 2621.308 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.458 kb on + strand, within EX28DRAFT_2586at 2621.459 kb on - strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.549 kb on + strand, within EX28DRAFT_2586at 2621.850 kb on - strand, within EX28DRAFT_2586at 2622.030 kb on + strandat 2622.030 kb on + strandat 2622.031 kb on - strandat 2622.031 kb on - strandat 2622.031 kb on - strandat 2622.034 kb on - strandat 2622.085 kb on + strandat 2622.086 kb on - strandat 2622.111 kb on + strandat 2622.235 kb on + strand, within EX28DRAFT_2587at 2622.302 kb on - strand, within EX28DRAFT_2587at 2622.318 kb on + strand, within EX28DRAFT_2587at 2622.318 kb on + strand, within EX28DRAFT_2587at 2622.319 kb on - strand, within EX28DRAFT_2587at 2622.368 kb on - strand, within EX28DRAFT_2587at 2622.379 kb on + strand, within EX28DRAFT_2587at 2622.379 kb on + strand, within EX28DRAFT_2587at 2622.380 kb on - strand, within EX28DRAFT_2587at 2622.380 kb on - strand, within EX28DRAFT_2587at 2622.462 kb on - strandat 2622.571 kb on - strandat 2622.571 kb on - strandat 2622.596 kb on + strandat 2622.711 kb on - strand, within EX28DRAFT_2588at 2622.741 kb on + strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.775 kb on - strand, within EX28DRAFT_2588at 2622.953 kb on - strand, within EX28DRAFT_2588

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,620,028 - -0.5
2,620,028 - +0.5
2,620,084 + +0.2
2,620,107 + -0.4
2,620,725 + EX28DRAFT_2585 0.74 -0.3
2,620,805 + EX28DRAFT_2585 0.84 -1.1
2,620,806 - EX28DRAFT_2585 0.84 -1.2
2,621,032 - +0.3
2,621,308 + EX28DRAFT_2586 0.33 +0.1
2,621,458 + EX28DRAFT_2586 0.46 -1.7
2,621,458 + EX28DRAFT_2586 0.46 +0.2
2,621,458 + EX28DRAFT_2586 0.46 -0.6
2,621,459 - EX28DRAFT_2586 0.46 -0.7
2,621,549 + EX28DRAFT_2586 0.54 -0.6
2,621,549 + EX28DRAFT_2586 0.54 -0.7
2,621,549 + EX28DRAFT_2586 0.54 -2.1
2,621,850 - EX28DRAFT_2586 0.82 +1.0
2,622,030 + -0.1
2,622,030 + -0.6
2,622,031 - -0.4
2,622,031 - +0.5
2,622,031 - -0.1
2,622,034 - +0.7
2,622,085 + +0.8
2,622,086 - -0.0
2,622,111 + +0.3
2,622,235 + EX28DRAFT_2587 0.25 -0.7
2,622,302 - EX28DRAFT_2587 0.46 +0.2
2,622,318 + EX28DRAFT_2587 0.51 -0.1
2,622,318 + EX28DRAFT_2587 0.51 +0.7
2,622,319 - EX28DRAFT_2587 0.51 -0.5
2,622,368 - EX28DRAFT_2587 0.66 -0.7
2,622,379 + EX28DRAFT_2587 0.70 +0.2
2,622,379 + EX28DRAFT_2587 0.70 +0.0
2,622,380 - EX28DRAFT_2587 0.70 +1.3
2,622,380 - EX28DRAFT_2587 0.70 +0.4
2,622,462 - -0.8
2,622,571 - -0.5
2,622,571 - +0.5
2,622,596 + +0.5
2,622,711 - EX28DRAFT_2588 0.10 -0.3
2,622,741 + EX28DRAFT_2588 0.12 -0.0
2,622,775 - EX28DRAFT_2588 0.15 +0.4
2,622,775 - EX28DRAFT_2588 0.15 -0.4
2,622,775 - EX28DRAFT_2588 0.15 +0.8
2,622,953 - EX28DRAFT_2588 0.27 +0.2

Or see this region's nucleotide sequence