Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2583

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2581 and EX28DRAFT_2582 are separated by 237 nucleotidesEX28DRAFT_2582 and EX28DRAFT_2583 are separated by 44 nucleotidesEX28DRAFT_2583 and EX28DRAFT_2584 are separated by 143 nucleotidesEX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotides EX28DRAFT_2581: EX28DRAFT_2581 - AroM protein, at 2,617,750 to 2,618,427 _2581 EX28DRAFT_2582: EX28DRAFT_2582 - hypothetical protein, at 2,618,665 to 2,618,856 _2582 EX28DRAFT_2583: EX28DRAFT_2583 - shikimate kinase (EC 2.7.1.71), at 2,618,901 to 2,619,425 _2583 EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027 _2584 EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934 _2585 Position (kb) 2618 2619 2620Strain fitness (log2 ratio) -2 -1 0 1 2at 2617.955 kb on + strand, within EX28DRAFT_2581at 2617.955 kb on + strand, within EX28DRAFT_2581at 2617.955 kb on + strand, within EX28DRAFT_2581at 2618.016 kb on + strand, within EX28DRAFT_2581at 2618.148 kb on + strand, within EX28DRAFT_2581at 2618.179 kb on + strand, within EX28DRAFT_2581at 2618.179 kb on + strand, within EX28DRAFT_2581at 2618.180 kb on - strand, within EX28DRAFT_2581at 2618.242 kb on + strand, within EX28DRAFT_2581at 2618.246 kb on - strand, within EX28DRAFT_2581at 2618.282 kb on + strand, within EX28DRAFT_2581at 2618.282 kb on + strand, within EX28DRAFT_2581at 2618.282 kb on + strand, within EX28DRAFT_2581at 2618.326 kb on - strand, within EX28DRAFT_2581at 2618.351 kb on - strand, within EX28DRAFT_2581at 2618.478 kb on + strandat 2618.572 kb on + strandat 2618.590 kb on - strandat 2618.857 kb on - strandat 2618.857 kb on - strandat 2618.883 kb on + strandat 2618.885 kb on + strandat 2618.885 kb on + strandat 2618.885 kb on + strandat 2618.885 kb on + strandat 2618.886 kb on - strandat 2618.886 kb on - strandat 2618.886 kb on - strandat 2618.886 kb on - strandat 2618.889 kb on + strandat 2618.889 kb on + strandat 2618.889 kb on + strandat 2618.889 kb on + strandat 2618.890 kb on - strandat 2618.890 kb on - strandat 2618.890 kb on - strandat 2618.890 kb on - strandat 2618.892 kb on - strandat 2618.933 kb on + strandat 2618.933 kb on + strandat 2618.934 kb on - strandat 2619.000 kb on + strand, within EX28DRAFT_2583at 2619.156 kb on - strand, within EX28DRAFT_2583at 2619.157 kb on + strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.158 kb on - strand, within EX28DRAFT_2583at 2619.406 kb on - strandat 2619.499 kb on + strandat 2620.028 kb on - strandat 2620.028 kb on - strandat 2620.084 kb on + strandat 2620.107 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
2,617,955 + EX28DRAFT_2581 0.30 -0.8
2,617,955 + EX28DRAFT_2581 0.30 -0.0
2,617,955 + EX28DRAFT_2581 0.30 -0.6
2,618,016 + EX28DRAFT_2581 0.39 -0.1
2,618,148 + EX28DRAFT_2581 0.59 -0.4
2,618,179 + EX28DRAFT_2581 0.63 -0.7
2,618,179 + EX28DRAFT_2581 0.63 -0.3
2,618,180 - EX28DRAFT_2581 0.63 -0.4
2,618,242 + EX28DRAFT_2581 0.73 +0.4
2,618,246 - EX28DRAFT_2581 0.73 -0.3
2,618,282 + EX28DRAFT_2581 0.78 -0.6
2,618,282 + EX28DRAFT_2581 0.78 -0.7
2,618,282 + EX28DRAFT_2581 0.78 +0.3
2,618,326 - EX28DRAFT_2581 0.85 -0.4
2,618,351 - EX28DRAFT_2581 0.89 -1.2
2,618,478 + -2.1
2,618,572 + -0.1
2,618,590 - -0.2
2,618,857 - +0.1
2,618,857 - +0.7
2,618,883 + -0.1
2,618,885 + -0.2
2,618,885 + -0.1
2,618,885 + -0.4
2,618,885 + +0.6
2,618,886 - +0.3
2,618,886 - +0.8
2,618,886 - +0.1
2,618,886 - +1.5
2,618,889 + +0.1
2,618,889 + +0.5
2,618,889 + +0.5
2,618,889 + +0.9
2,618,890 - -1.0
2,618,890 - +0.1
2,618,890 - +0.5
2,618,890 - +0.2
2,618,892 - +0.5
2,618,933 + +0.8
2,618,933 + +0.9
2,618,934 - +0.7
2,619,000 + EX28DRAFT_2583 0.19 +1.2
2,619,156 - EX28DRAFT_2583 0.49 +2.0
2,619,157 + EX28DRAFT_2583 0.49 +0.6
2,619,158 - EX28DRAFT_2583 0.49 +0.2
2,619,158 - EX28DRAFT_2583 0.49 +1.8
2,619,158 - EX28DRAFT_2583 0.49 +1.4
2,619,158 - EX28DRAFT_2583 0.49 +0.9
2,619,158 - EX28DRAFT_2583 0.49 +2.1
2,619,158 - EX28DRAFT_2583 0.49 +1.1
2,619,406 - +0.5
2,619,499 + +0.9
2,620,028 - -0.5
2,620,028 - +0.5
2,620,084 + +0.2
2,620,107 + -0.4

Or see this region's nucleotide sequence