Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2577 and EX28DRAFT_2578 are separated by 75 nucleotides EX28DRAFT_2578 and EX28DRAFT_2579 are separated by 36 nucleotides EX28DRAFT_2579 and EX28DRAFT_2580 are separated by 48 nucleotides
EX28DRAFT_2577: EX28DRAFT_2577 - exonuclease SbcC, at 2,612,192 to 2,615,323
_2577
EX28DRAFT_2578: EX28DRAFT_2578 - Transcriptional regulator/sugar kinase, at 2,615,399 to 2,616,391
_2578
EX28DRAFT_2579: EX28DRAFT_2579 - DNA recombination-dependent growth factor C, at 2,616,428 to 2,617,342
_2579
EX28DRAFT_2580: EX28DRAFT_2580 - Uncharacterized protein conserved in bacteria, at 2,617,391 to 2,617,678
_2580
Position (kb)
2615
2616
2617 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2614.520 kb on - strand, within EX28DRAFT_2577 at 2614.563 kb on + strand, within EX28DRAFT_2577 at 2614.564 kb on - strand, within EX28DRAFT_2577 at 2614.736 kb on - strand, within EX28DRAFT_2577 at 2614.983 kb on + strand, within EX28DRAFT_2577 at 2614.984 kb on - strand, within EX28DRAFT_2577 at 2615.024 kb on - strand at 2615.226 kb on + strand at 2615.226 kb on + strand at 2615.303 kb on - strand at 2615.391 kb on - strand at 2615.582 kb on - strand, within EX28DRAFT_2578 at 2615.743 kb on + strand, within EX28DRAFT_2578 at 2615.744 kb on - strand, within EX28DRAFT_2578 at 2615.756 kb on - strand, within EX28DRAFT_2578 at 2615.800 kb on + strand, within EX28DRAFT_2578 at 2615.801 kb on - strand, within EX28DRAFT_2578 at 2615.801 kb on - strand, within EX28DRAFT_2578 at 2616.093 kb on + strand, within EX28DRAFT_2578 at 2616.339 kb on + strand at 2616.340 kb on - strand at 2616.425 kb on - strand at 2616.515 kb on + strand at 2616.515 kb on + strand at 2616.515 kb on + strand at 2616.516 kb on - strand at 2616.516 kb on - strand at 2616.516 kb on - strand at 2616.517 kb on + strand at 2616.545 kb on - strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.878 kb on - strand, within EX28DRAFT_2579 at 2617.226 kb on - strand, within EX28DRAFT_2579
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,614,520 - EX28DRAFT_2577 0.74 +0.4 2,614,563 + EX28DRAFT_2577 0.76 -0.5 2,614,564 - EX28DRAFT_2577 0.76 +0.8 2,614,736 - EX28DRAFT_2577 0.81 +0.8 2,614,983 + EX28DRAFT_2577 0.89 +0.9 2,614,984 - EX28DRAFT_2577 0.89 -0.1 2,615,024 - -0.4 2,615,226 + -0.1 2,615,226 + -0.2 2,615,303 - -1.4 2,615,391 - +1.5 2,615,582 - EX28DRAFT_2578 0.18 +1.4 2,615,743 + EX28DRAFT_2578 0.35 +1.1 2,615,744 - EX28DRAFT_2578 0.35 +1.5 2,615,756 - EX28DRAFT_2578 0.36 +1.8 2,615,800 + EX28DRAFT_2578 0.40 +2.4 2,615,801 - EX28DRAFT_2578 0.40 +1.2 2,615,801 - EX28DRAFT_2578 0.40 +1.7 2,616,093 + EX28DRAFT_2578 0.70 +1.1 2,616,339 + +1.2 2,616,340 - -2.2 2,616,425 - -2.7 2,616,515 + -0.5 2,616,515 + -0.6 2,616,515 + +0.7 2,616,516 - -3.1 2,616,516 - -0.1 2,616,516 - -2.3 2,616,517 + -0.3 2,616,545 - EX28DRAFT_2579 0.13 -1.3 2,616,877 + EX28DRAFT_2579 0.49 -1.1 2,616,877 + EX28DRAFT_2579 0.49 -1.1 2,616,877 + EX28DRAFT_2579 0.49 +0.1 2,616,878 - EX28DRAFT_2579 0.49 -0.9 2,617,226 - EX28DRAFT_2579 0.87 +0.1
Or see this region's nucleotide sequence