Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2578

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2577 and EX28DRAFT_2578 are separated by 75 nucleotidesEX28DRAFT_2578 and EX28DRAFT_2579 are separated by 36 nucleotidesEX28DRAFT_2579 and EX28DRAFT_2580 are separated by 48 nucleotides EX28DRAFT_2577: EX28DRAFT_2577 - exonuclease SbcC, at 2,612,192 to 2,615,323 _2577 EX28DRAFT_2578: EX28DRAFT_2578 - Transcriptional regulator/sugar kinase, at 2,615,399 to 2,616,391 _2578 EX28DRAFT_2579: EX28DRAFT_2579 - DNA recombination-dependent growth factor C, at 2,616,428 to 2,617,342 _2579 EX28DRAFT_2580: EX28DRAFT_2580 - Uncharacterized protein conserved in bacteria, at 2,617,391 to 2,617,678 _2580 Position (kb) 2615 2616 2617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2614.520 kb on - strand, within EX28DRAFT_2577at 2614.563 kb on + strand, within EX28DRAFT_2577at 2614.564 kb on - strand, within EX28DRAFT_2577at 2614.736 kb on - strand, within EX28DRAFT_2577at 2614.983 kb on + strand, within EX28DRAFT_2577at 2614.984 kb on - strand, within EX28DRAFT_2577at 2615.024 kb on - strandat 2615.226 kb on + strandat 2615.226 kb on + strandat 2615.303 kb on - strandat 2615.391 kb on - strandat 2615.582 kb on - strand, within EX28DRAFT_2578at 2615.743 kb on + strand, within EX28DRAFT_2578at 2615.744 kb on - strand, within EX28DRAFT_2578at 2615.756 kb on - strand, within EX28DRAFT_2578at 2615.800 kb on + strand, within EX28DRAFT_2578at 2615.801 kb on - strand, within EX28DRAFT_2578at 2615.801 kb on - strand, within EX28DRAFT_2578at 2616.093 kb on + strand, within EX28DRAFT_2578at 2616.339 kb on + strandat 2616.340 kb on - strandat 2616.425 kb on - strandat 2616.515 kb on + strandat 2616.515 kb on + strandat 2616.515 kb on + strandat 2616.516 kb on - strandat 2616.516 kb on - strandat 2616.516 kb on - strandat 2616.517 kb on + strandat 2616.545 kb on - strand, within EX28DRAFT_2579at 2616.877 kb on + strand, within EX28DRAFT_2579at 2616.877 kb on + strand, within EX28DRAFT_2579at 2616.877 kb on + strand, within EX28DRAFT_2579at 2616.878 kb on - strand, within EX28DRAFT_2579at 2617.226 kb on - strand, within EX28DRAFT_2579

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,614,520 - EX28DRAFT_2577 0.74 +0.4
2,614,563 + EX28DRAFT_2577 0.76 -0.5
2,614,564 - EX28DRAFT_2577 0.76 +0.8
2,614,736 - EX28DRAFT_2577 0.81 +0.8
2,614,983 + EX28DRAFT_2577 0.89 +0.9
2,614,984 - EX28DRAFT_2577 0.89 -0.1
2,615,024 - -0.4
2,615,226 + -0.1
2,615,226 + -0.2
2,615,303 - -1.4
2,615,391 - +1.5
2,615,582 - EX28DRAFT_2578 0.18 +1.4
2,615,743 + EX28DRAFT_2578 0.35 +1.1
2,615,744 - EX28DRAFT_2578 0.35 +1.5
2,615,756 - EX28DRAFT_2578 0.36 +1.8
2,615,800 + EX28DRAFT_2578 0.40 +2.4
2,615,801 - EX28DRAFT_2578 0.40 +1.2
2,615,801 - EX28DRAFT_2578 0.40 +1.7
2,616,093 + EX28DRAFT_2578 0.70 +1.1
2,616,339 + +1.2
2,616,340 - -2.2
2,616,425 - -2.7
2,616,515 + -0.5
2,616,515 + -0.6
2,616,515 + +0.7
2,616,516 - -3.1
2,616,516 - -0.1
2,616,516 - -2.3
2,616,517 + -0.3
2,616,545 - EX28DRAFT_2579 0.13 -1.3
2,616,877 + EX28DRAFT_2579 0.49 -1.1
2,616,877 + EX28DRAFT_2579 0.49 -1.1
2,616,877 + EX28DRAFT_2579 0.49 +0.1
2,616,878 - EX28DRAFT_2579 0.49 -0.9
2,617,226 - EX28DRAFT_2579 0.87 +0.1

Or see this region's nucleotide sequence