Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2540 and EX28DRAFT_2541 overlap by 11 nucleotides EX28DRAFT_2541 and EX28DRAFT_2542 overlap by 1 nucleotides EX28DRAFT_2542 and EX28DRAFT_2543 are separated by 11 nucleotides EX28DRAFT_2543 and EX28DRAFT_2544 are separated by 148 nucleotides
EX28DRAFT_2540: EX28DRAFT_2540 - cytochrome o ubiquinol oxidase, subunit I, at 2,572,596 to 2,574,587
_2540
EX28DRAFT_2541: EX28DRAFT_2541 - cytochrome o ubiquinol oxidase, subunit III, at 2,574,577 to 2,575,191
_2541
EX28DRAFT_2542: EX28DRAFT_2542 - cytochrome o ubiquinol oxidase subunit IV, at 2,575,191 to 2,575,517
_2542
EX28DRAFT_2543: EX28DRAFT_2543 - protoheme IX farnesyltransferase, at 2,575,529 to 2,576,416
_2543
EX28DRAFT_2544: EX28DRAFT_2544 - Arabinose efflux permease, at 2,576,565 to 2,577,926
_2544
Position (kb)
2575
2576
2577 Strain fitness (log2 ratio)
-1
0
1
2 at 2574.715 kb on + strand, within EX28DRAFT_2541 at 2575.169 kb on + strand at 2575.190 kb on - strand at 2575.323 kb on - strand, within EX28DRAFT_2542 at 2575.419 kb on - strand, within EX28DRAFT_2542 at 2575.497 kb on + strand at 2575.498 kb on - strand at 2575.515 kb on + strand at 2575.529 kb on - strand at 2575.642 kb on + strand, within EX28DRAFT_2543 at 2575.646 kb on + strand, within EX28DRAFT_2543 at 2575.647 kb on - strand, within EX28DRAFT_2543 at 2575.700 kb on + strand, within EX28DRAFT_2543 at 2575.701 kb on - strand, within EX28DRAFT_2543 at 2575.883 kb on + strand, within EX28DRAFT_2543 at 2575.883 kb on + strand, within EX28DRAFT_2543 at 2575.904 kb on + strand, within EX28DRAFT_2543 at 2575.904 kb on + strand, within EX28DRAFT_2543 at 2575.905 kb on - strand, within EX28DRAFT_2543 at 2576.222 kb on + strand, within EX28DRAFT_2543 at 2576.405 kb on + strand at 2576.406 kb on - strand at 2576.431 kb on + strand at 2576.431 kb on + strand at 2576.476 kb on + strand at 2576.477 kb on - strand at 2576.488 kb on + strand at 2576.489 kb on - strand at 2576.533 kb on - strand at 2576.538 kb on - strand at 2576.564 kb on - strand at 2576.575 kb on - strand at 2576.614 kb on + strand at 2576.677 kb on - strand at 2576.734 kb on - strand, within EX28DRAFT_2544 at 2577.038 kb on + strand, within EX28DRAFT_2544 at 2577.039 kb on - strand, within EX28DRAFT_2544 at 2577.166 kb on + strand, within EX28DRAFT_2544 at 2577.166 kb on + strand, within EX28DRAFT_2544 at 2577.167 kb on - strand, within EX28DRAFT_2544 at 2577.228 kb on - strand, within EX28DRAFT_2544
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,574,715 + EX28DRAFT_2541 0.22 +1.5 2,575,169 + +2.6 2,575,190 - +0.6 2,575,323 - EX28DRAFT_2542 0.40 -0.2 2,575,419 - EX28DRAFT_2542 0.70 +2.2 2,575,497 + +0.7 2,575,498 - +0.9 2,575,515 + +1.2 2,575,529 - +1.5 2,575,642 + EX28DRAFT_2543 0.13 +1.2 2,575,646 + EX28DRAFT_2543 0.13 +0.9 2,575,647 - EX28DRAFT_2543 0.13 +1.6 2,575,700 + EX28DRAFT_2543 0.19 +0.7 2,575,701 - EX28DRAFT_2543 0.19 +1.5 2,575,883 + EX28DRAFT_2543 0.40 +0.6 2,575,883 + EX28DRAFT_2543 0.40 +1.4 2,575,904 + EX28DRAFT_2543 0.42 +1.4 2,575,904 + EX28DRAFT_2543 0.42 +1.6 2,575,905 - EX28DRAFT_2543 0.42 +1.1 2,576,222 + EX28DRAFT_2543 0.78 +0.8 2,576,405 + +0.2 2,576,406 - -0.6 2,576,431 + -0.3 2,576,431 + +0.4 2,576,476 + -0.9 2,576,477 - -0.1 2,576,488 + -0.4 2,576,489 - +0.0 2,576,533 - +0.7 2,576,538 - -0.6 2,576,564 - +0.8 2,576,575 - +0.3 2,576,614 + -0.0 2,576,677 - +0.2 2,576,734 - EX28DRAFT_2544 0.12 -0.0 2,577,038 + EX28DRAFT_2544 0.35 -0.4 2,577,039 - EX28DRAFT_2544 0.35 -1.1 2,577,166 + EX28DRAFT_2544 0.44 +2.2 2,577,166 + EX28DRAFT_2544 0.44 -1.2 2,577,167 - EX28DRAFT_2544 0.44 +0.8 2,577,228 - EX28DRAFT_2544 0.49 +0.9
Or see this region's nucleotide sequence