Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2538 and EX28DRAFT_2539 are separated by 477 nucleotides EX28DRAFT_2539 and EX28DRAFT_2540 are separated by 16 nucleotides
EX28DRAFT_2538: EX28DRAFT_2538 - AmpG-like permease, at 2,569,679 to 2,571,154
_2538
EX28DRAFT_2539: EX28DRAFT_2539 - cytochrome o ubiquinol oxidase subunit II, at 2,571,632 to 2,572,579
_2539
EX28DRAFT_2540: EX28DRAFT_2540 - cytochrome o ubiquinol oxidase, subunit I, at 2,572,596 to 2,574,587
_2540
Position (kb)
2571
2572
2573 Strain fitness (log2 ratio)
-1
0
1
2 at 2570.900 kb on + strand, within EX28DRAFT_2538 at 2570.923 kb on + strand, within EX28DRAFT_2538 at 2571.017 kb on - strand at 2571.020 kb on - strand at 2571.043 kb on - strand at 2571.445 kb on - strand at 2571.446 kb on + strand at 2571.486 kb on + strand at 2571.487 kb on - strand at 2571.691 kb on - strand at 2571.863 kb on + strand, within EX28DRAFT_2539 at 2571.863 kb on + strand, within EX28DRAFT_2539 at 2571.864 kb on - strand, within EX28DRAFT_2539 at 2571.866 kb on - strand, within EX28DRAFT_2539 at 2571.920 kb on - strand, within EX28DRAFT_2539 at 2572.012 kb on + strand, within EX28DRAFT_2539 at 2572.238 kb on + strand, within EX28DRAFT_2539 at 2572.239 kb on - strand, within EX28DRAFT_2539 at 2572.247 kb on - strand, within EX28DRAFT_2539 at 2572.247 kb on - strand, within EX28DRAFT_2539 at 2572.537 kb on + strand at 2573.232 kb on - strand, within EX28DRAFT_2540 at 2573.280 kb on - strand, within EX28DRAFT_2540 at 2573.312 kb on + strand, within EX28DRAFT_2540 at 2573.418 kb on + strand, within EX28DRAFT_2540 at 2573.418 kb on + strand, within EX28DRAFT_2540 at 2573.419 kb on - strand, within EX28DRAFT_2540 at 2573.458 kb on - strand, within EX28DRAFT_2540
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,570,900 + EX28DRAFT_2538 0.83 -0.1 2,570,923 + EX28DRAFT_2538 0.84 +2.4 2,571,017 - -0.1 2,571,020 - -0.5 2,571,043 - +0.6 2,571,445 - -0.0 2,571,446 + -0.5 2,571,486 + +0.6 2,571,487 - +0.3 2,571,691 - +2.1 2,571,863 + EX28DRAFT_2539 0.24 +2.3 2,571,863 + EX28DRAFT_2539 0.24 +2.1 2,571,864 - EX28DRAFT_2539 0.24 +0.4 2,571,866 - EX28DRAFT_2539 0.25 +1.1 2,571,920 - EX28DRAFT_2539 0.30 +2.3 2,572,012 + EX28DRAFT_2539 0.40 +1.3 2,572,238 + EX28DRAFT_2539 0.64 +1.0 2,572,239 - EX28DRAFT_2539 0.64 +1.8 2,572,247 - EX28DRAFT_2539 0.65 +1.6 2,572,247 - EX28DRAFT_2539 0.65 +0.9 2,572,537 + +1.4 2,573,232 - EX28DRAFT_2540 0.32 +2.4 2,573,280 - EX28DRAFT_2540 0.34 +1.8 2,573,312 + EX28DRAFT_2540 0.36 +1.5 2,573,418 + EX28DRAFT_2540 0.41 +0.9 2,573,418 + EX28DRAFT_2540 0.41 +1.7 2,573,419 - EX28DRAFT_2540 0.41 +1.1 2,573,458 - EX28DRAFT_2540 0.43 +2.2
Or see this region's nucleotide sequence