Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2530

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2529 and EX28DRAFT_2530 are separated by 212 nucleotidesEX28DRAFT_2530 and EX28DRAFT_2531 are separated by 210 nucleotides EX28DRAFT_2529: EX28DRAFT_2529 - Parvulin-like peptidyl-prolyl isomerase, at 2,559,413 to 2,561,284 _2529 EX28DRAFT_2530: EX28DRAFT_2530 - Bacterial nucleoid DNA-binding protein, at 2,561,497 to 2,561,769 _2530 EX28DRAFT_2531: EX28DRAFT_2531 - endopeptidase La, at 2,561,980 to 2,564,334 _2531 Position (kb) 2561 2562Strain fitness (log2 ratio) -2 -1 0 1at 2560.580 kb on - strand, within EX28DRAFT_2529at 2560.581 kb on + strand, within EX28DRAFT_2529at 2560.581 kb on + strand, within EX28DRAFT_2529at 2560.581 kb on + strand, within EX28DRAFT_2529at 2560.633 kb on - strand, within EX28DRAFT_2529at 2560.636 kb on - strand, within EX28DRAFT_2529at 2560.831 kb on - strand, within EX28DRAFT_2529at 2561.163 kb on + strandat 2561.188 kb on - strandat 2561.271 kb on - strandat 2561.290 kb on - strandat 2561.362 kb on - strandat 2561.465 kb on + strandat 2561.466 kb on - strandat 2561.524 kb on - strandat 2561.686 kb on + strand, within EX28DRAFT_2530at 2561.695 kb on + strand, within EX28DRAFT_2530at 2561.788 kb on - strandat 2561.795 kb on - strandat 2561.795 kb on - strandat 2561.836 kb on + strandat 2561.858 kb on + strandat 2561.859 kb on - strandat 2561.859 kb on - strandat 2561.859 kb on - strandat 2561.859 kb on - strandat 2561.886 kb on - strandat 2561.886 kb on - strandat 2561.886 kb on - strandat 2561.898 kb on - strandat 2561.902 kb on + strandat 2561.902 kb on + strandat 2561.906 kb on + strandat 2561.907 kb on - strandat 2561.908 kb on + strandat 2561.940 kb on + strandat 2561.941 kb on - strandat 2561.955 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,560,580 - EX28DRAFT_2529 0.62 -0.4
2,560,581 + EX28DRAFT_2529 0.62 +0.0
2,560,581 + EX28DRAFT_2529 0.62 -1.6
2,560,581 + EX28DRAFT_2529 0.62 +0.8
2,560,633 - EX28DRAFT_2529 0.65 -0.6
2,560,636 - EX28DRAFT_2529 0.65 -0.2
2,560,831 - EX28DRAFT_2529 0.76 -2.5
2,561,163 + -0.5
2,561,188 - -1.0
2,561,271 - -0.0
2,561,290 - +0.5
2,561,362 - -0.2
2,561,465 + -0.1
2,561,466 - -1.5
2,561,524 - +0.4
2,561,686 + EX28DRAFT_2530 0.69 -2.7
2,561,695 + EX28DRAFT_2530 0.73 -1.5
2,561,788 - -1.0
2,561,795 - -1.9
2,561,795 - -1.3
2,561,836 + -1.5
2,561,858 + -1.9
2,561,859 - -1.7
2,561,859 - -0.5
2,561,859 - -2.0
2,561,859 - -0.1
2,561,886 - -0.8
2,561,886 - -1.1
2,561,886 - -0.1
2,561,898 - -0.6
2,561,902 + -0.1
2,561,902 + +0.0
2,561,906 + +0.7
2,561,907 - -0.1
2,561,908 + -0.9
2,561,940 + -2.3
2,561,941 - -1.0
2,561,955 + -0.8

Or see this region's nucleotide sequence