Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2510

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2509 and EX28DRAFT_2510 are separated by 77 nucleotidesEX28DRAFT_2510 and EX28DRAFT_2511 are separated by 86 nucleotides EX28DRAFT_2509: EX28DRAFT_2509 - transcriptional regulator, LacI family, at 2,541,449 to 2,542,519 _2509 EX28DRAFT_2510: EX28DRAFT_2510 - Predicted membrane protein, at 2,542,597 to 2,543,208 _2510 EX28DRAFT_2511: EX28DRAFT_2511 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 2,543,295 to 2,544,716 _2511 Position (kb) 2542 2543 2544Strain fitness (log2 ratio) -2 -1 0 1at 2541.877 kb on - strand, within EX28DRAFT_2509at 2542.381 kb on - strand, within EX28DRAFT_2509at 2542.500 kb on + strandat 2542.501 kb on - strandat 2542.501 kb on - strandat 2542.550 kb on + strandat 2542.672 kb on - strand, within EX28DRAFT_2510at 2542.672 kb on - strand, within EX28DRAFT_2510at 2542.694 kb on + strand, within EX28DRAFT_2510at 2542.694 kb on + strand, within EX28DRAFT_2510at 2542.695 kb on - strand, within EX28DRAFT_2510at 2542.695 kb on - strand, within EX28DRAFT_2510at 2542.695 kb on - strand, within EX28DRAFT_2510at 2542.856 kb on + strand, within EX28DRAFT_2510at 2542.856 kb on + strand, within EX28DRAFT_2510at 2542.857 kb on - strand, within EX28DRAFT_2510at 2542.857 kb on - strand, within EX28DRAFT_2510at 2543.108 kb on - strand, within EX28DRAFT_2510at 2543.174 kb on - strandat 2543.183 kb on + strandat 2543.184 kb on - strandat 2543.184 kb on - strandat 2543.184 kb on - strandat 2543.295 kb on - strandat 2543.668 kb on - strand, within EX28DRAFT_2511at 2543.668 kb on - strand, within EX28DRAFT_2511at 2543.668 kb on - strand, within EX28DRAFT_2511at 2544.056 kb on + strand, within EX28DRAFT_2511

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,541,877 - EX28DRAFT_2509 0.40 -1.5
2,542,381 - EX28DRAFT_2509 0.87 +0.6
2,542,500 + -0.2
2,542,501 - -1.8
2,542,501 - -2.7
2,542,550 + +0.2
2,542,672 - EX28DRAFT_2510 0.12 +0.4
2,542,672 - EX28DRAFT_2510 0.12 +0.8
2,542,694 + EX28DRAFT_2510 0.16 +0.6
2,542,694 + EX28DRAFT_2510 0.16 -0.5
2,542,695 - EX28DRAFT_2510 0.16 -0.2
2,542,695 - EX28DRAFT_2510 0.16 -2.0
2,542,695 - EX28DRAFT_2510 0.16 -0.3
2,542,856 + EX28DRAFT_2510 0.42 +0.5
2,542,856 + EX28DRAFT_2510 0.42 +0.6
2,542,857 - EX28DRAFT_2510 0.42 +0.2
2,542,857 - EX28DRAFT_2510 0.42 +0.1
2,543,108 - EX28DRAFT_2510 0.83 +0.6
2,543,174 - -1.7
2,543,183 + -0.3
2,543,184 - +0.2
2,543,184 - -0.1
2,543,184 - -0.3
2,543,295 - +0.8
2,543,668 - EX28DRAFT_2511 0.26 +0.8
2,543,668 - EX28DRAFT_2511 0.26 +0.5
2,543,668 - EX28DRAFT_2511 0.26 -0.3
2,544,056 + EX28DRAFT_2511 0.54 -2.5

Or see this region's nucleotide sequence