Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2460

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2457 and EX28DRAFT_2458 are separated by 68 nucleotidesEX28DRAFT_2458 and EX28DRAFT_2459 are separated by 161 nucleotidesEX28DRAFT_2459 and EX28DRAFT_2460 overlap by 4 nucleotidesEX28DRAFT_2460 and EX28DRAFT_2461 are separated by 84 nucleotides EX28DRAFT_2457: EX28DRAFT_2457 - Protein of unknown function (DUF1471), at 2,487,499 to 2,487,708 _2457 EX28DRAFT_2458: EX28DRAFT_2458 - hypothetical protein, at 2,487,777 to 2,487,962 _2458 EX28DRAFT_2459: EX28DRAFT_2459 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 2,488,124 to 2,488,633 _2459 EX28DRAFT_2460: EX28DRAFT_2460 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 2,488,630 to 2,489,697 _2460 EX28DRAFT_2461: EX28DRAFT_2461 - tRNA 2-selenouridine synthase, at 2,489,782 to 2,490,852 _2461 Position (kb) 2488 2489 2490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2487.647 kb on - strand, within EX28DRAFT_2457at 2487.648 kb on + strand, within EX28DRAFT_2457at 2487.649 kb on - strand, within EX28DRAFT_2457at 2487.682 kb on + strand, within EX28DRAFT_2457at 2487.682 kb on + strand, within EX28DRAFT_2457at 2487.683 kb on - strand, within EX28DRAFT_2457at 2487.707 kb on - strandat 2487.735 kb on - strandat 2487.755 kb on + strandat 2487.796 kb on + strand, within EX28DRAFT_2458at 2487.796 kb on + strand, within EX28DRAFT_2458at 2487.796 kb on + strand, within EX28DRAFT_2458at 2487.796 kb on + strand, within EX28DRAFT_2458at 2487.797 kb on - strand, within EX28DRAFT_2458at 2487.801 kb on - strand, within EX28DRAFT_2458at 2487.960 kb on + strandat 2487.970 kb on + strandat 2487.970 kb on + strandat 2488.018 kb on - strandat 2488.061 kb on + strandat 2488.555 kb on - strand, within EX28DRAFT_2459at 2488.664 kb on + strandat 2489.254 kb on - strand, within EX28DRAFT_2460at 2489.284 kb on + strand, within EX28DRAFT_2460at 2489.569 kb on - strand, within EX28DRAFT_2460at 2489.695 kb on + strandat 2489.696 kb on - strandat 2489.738 kb on + strandat 2489.738 kb on + strandat 2489.739 kb on - strandat 2489.935 kb on + strand, within EX28DRAFT_2461at 2489.935 kb on + strand, within EX28DRAFT_2461at 2489.935 kb on + strand, within EX28DRAFT_2461at 2490.087 kb on + strand, within EX28DRAFT_2461at 2490.088 kb on - strand, within EX28DRAFT_2461at 2490.148 kb on - strand, within EX28DRAFT_2461at 2490.148 kb on - strand, within EX28DRAFT_2461at 2490.529 kb on + strand, within EX28DRAFT_2461at 2490.601 kb on + strand, within EX28DRAFT_2461

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,487,647 - EX28DRAFT_2457 0.70 -3.2
2,487,648 + EX28DRAFT_2457 0.71 -1.1
2,487,649 - EX28DRAFT_2457 0.71 +0.9
2,487,682 + EX28DRAFT_2457 0.87 +0.1
2,487,682 + EX28DRAFT_2457 0.87 +0.5
2,487,683 - EX28DRAFT_2457 0.88 -0.9
2,487,707 - +0.9
2,487,735 - -0.0
2,487,755 + +0.2
2,487,796 + EX28DRAFT_2458 0.10 +0.2
2,487,796 + EX28DRAFT_2458 0.10 +0.9
2,487,796 + EX28DRAFT_2458 0.10 +1.8
2,487,796 + EX28DRAFT_2458 0.10 +0.6
2,487,797 - EX28DRAFT_2458 0.11 +0.3
2,487,801 - EX28DRAFT_2458 0.13 +0.2
2,487,960 + -0.4
2,487,970 + +0.2
2,487,970 + +0.3
2,488,018 - -0.4
2,488,061 + -0.7
2,488,555 - EX28DRAFT_2459 0.85 +2.2
2,488,664 + -1.0
2,489,254 - EX28DRAFT_2460 0.58 +4.2
2,489,284 + EX28DRAFT_2460 0.61 +2.2
2,489,569 - EX28DRAFT_2460 0.88 -0.2
2,489,695 + +0.0
2,489,696 - +0.1
2,489,738 + +1.2
2,489,738 + -0.6
2,489,739 - -1.1
2,489,935 + EX28DRAFT_2461 0.14 -0.2
2,489,935 + EX28DRAFT_2461 0.14 +0.4
2,489,935 + EX28DRAFT_2461 0.14 -0.4
2,490,087 + EX28DRAFT_2461 0.28 -0.7
2,490,088 - EX28DRAFT_2461 0.29 -0.2
2,490,148 - EX28DRAFT_2461 0.34 -0.2
2,490,148 - EX28DRAFT_2461 0.34 +0.2
2,490,529 + EX28DRAFT_2461 0.70 -1.0
2,490,601 + EX28DRAFT_2461 0.76 -0.1

Or see this region's nucleotide sequence