Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2441

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2440 and EX28DRAFT_2441 are separated by 24 nucleotidesEX28DRAFT_2441 and EX28DRAFT_2442 are separated by 800 nucleotides EX28DRAFT_2440: EX28DRAFT_2440 - FOG: EAL domain, at 2,470,717 to 2,471,415 _2440 EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168 _2441 EX28DRAFT_2442: EX28DRAFT_2442 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,472,969 to 2,473,601 _2442 Position (kb) 2471 2472 2473Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2470.613 kb on + strandat 2470.623 kb on + strandat 2470.623 kb on + strandat 2470.623 kb on + strandat 2470.623 kb on + strandat 2470.624 kb on - strandat 2470.624 kb on - strandat 2470.624 kb on - strandat 2470.666 kb on - strandat 2470.759 kb on + strandat 2470.759 kb on + strandat 2470.760 kb on - strandat 2470.785 kb on + strandat 2470.785 kb on + strandat 2470.786 kb on - strandat 2470.786 kb on - strandat 2470.838 kb on + strand, within EX28DRAFT_2440at 2470.839 kb on - strand, within EX28DRAFT_2440at 2471.226 kb on + strand, within EX28DRAFT_2440at 2471.226 kb on + strand, within EX28DRAFT_2440at 2471.227 kb on - strand, within EX28DRAFT_2440at 2471.227 kb on - strand, within EX28DRAFT_2440at 2471.319 kb on + strand, within EX28DRAFT_2440at 2471.319 kb on + strand, within EX28DRAFT_2440at 2471.320 kb on - strand, within EX28DRAFT_2440at 2471.320 kb on - strand, within EX28DRAFT_2440at 2471.381 kb on - strandat 2471.383 kb on + strandat 2471.383 kb on + strandat 2471.384 kb on - strandat 2471.500 kb on - strandat 2471.614 kb on + strand, within EX28DRAFT_2441at 2471.734 kb on - strand, within EX28DRAFT_2441at 2471.787 kb on + strand, within EX28DRAFT_2441at 2471.787 kb on + strand, within EX28DRAFT_2441at 2471.787 kb on + strand, within EX28DRAFT_2441at 2471.788 kb on - strand, within EX28DRAFT_2441at 2471.788 kb on - strand, within EX28DRAFT_2441at 2471.788 kb on - strand, within EX28DRAFT_2441at 2471.839 kb on + strand, within EX28DRAFT_2441at 2471.936 kb on + strand, within EX28DRAFT_2441at 2472.033 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.061 kb on - strand, within EX28DRAFT_2441at 2472.064 kb on + strand, within EX28DRAFT_2441at 2472.065 kb on - strand, within EX28DRAFT_2441at 2472.065 kb on - strand, within EX28DRAFT_2441at 2472.098 kb on + strandat 2472.175 kb on - strandat 2472.175 kb on - strandat 2472.252 kb on - strandat 2472.254 kb on - strandat 2472.257 kb on + strandat 2472.331 kb on + strandat 2472.363 kb on - strandat 2472.386 kb on - strandat 2472.404 kb on + strandat 2472.405 kb on - strandat 2472.601 kb on + strandat 2472.710 kb on - strandat 2472.744 kb on - strandat 2472.748 kb on + strandat 2472.748 kb on + strandat 2472.749 kb on - strandat 2472.771 kb on - strandat 2472.823 kb on + strandat 2472.823 kb on + strandat 2472.824 kb on - strandat 2472.840 kb on + strandat 2472.873 kb on + strandat 2472.873 kb on + strandat 2472.876 kb on + strandat 2472.876 kb on + strandat 2472.877 kb on - strandat 2472.881 kb on + strandat 2472.899 kb on - strandat 2472.949 kb on - strandat 2472.992 kb on + strandat 2473.046 kb on + strand, within EX28DRAFT_2442at 2473.052 kb on + strand, within EX28DRAFT_2442

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,470,613 + +0.1
2,470,623 + -0.3
2,470,623 + +1.0
2,470,623 + -0.1
2,470,623 + -0.0
2,470,624 - -0.1
2,470,624 - +0.1
2,470,624 - +0.9
2,470,666 - +0.4
2,470,759 + -0.0
2,470,759 + +0.2
2,470,760 - -0.3
2,470,785 + +0.6
2,470,785 + +0.8
2,470,786 - +0.2
2,470,786 - +2.7
2,470,838 + EX28DRAFT_2440 0.17 +0.2
2,470,839 - EX28DRAFT_2440 0.17 +0.3
2,471,226 + EX28DRAFT_2440 0.73 +0.2
2,471,226 + EX28DRAFT_2440 0.73 +0.3
2,471,227 - EX28DRAFT_2440 0.73 +0.4
2,471,227 - EX28DRAFT_2440 0.73 +0.7
2,471,319 + EX28DRAFT_2440 0.86 -0.4
2,471,319 + EX28DRAFT_2440 0.86 -1.0
2,471,320 - EX28DRAFT_2440 0.86 -1.9
2,471,320 - EX28DRAFT_2440 0.86 -0.2
2,471,381 - +1.6
2,471,383 + -0.5
2,471,383 + -2.9
2,471,384 - -0.0
2,471,500 - +0.1
2,471,614 + EX28DRAFT_2441 0.24 +1.1
2,471,734 - EX28DRAFT_2441 0.40 -1.1
2,471,787 + EX28DRAFT_2441 0.48 +0.6
2,471,787 + EX28DRAFT_2441 0.48 +1.2
2,471,787 + EX28DRAFT_2441 0.48 +0.7
2,471,788 - EX28DRAFT_2441 0.48 -0.4
2,471,788 - EX28DRAFT_2441 0.48 +0.2
2,471,788 - EX28DRAFT_2441 0.48 +0.5
2,471,839 + EX28DRAFT_2441 0.55 +0.6
2,471,936 + EX28DRAFT_2441 0.68 +1.4
2,472,033 + EX28DRAFT_2441 0.81 +0.0
2,472,060 + EX28DRAFT_2441 0.85 +0.5
2,472,060 + EX28DRAFT_2441 0.85 +1.5
2,472,060 + EX28DRAFT_2441 0.85 +0.3
2,472,061 - EX28DRAFT_2441 0.85 +0.5
2,472,064 + EX28DRAFT_2441 0.86 +0.4
2,472,065 - EX28DRAFT_2441 0.86 +0.4
2,472,065 - EX28DRAFT_2441 0.86 +0.4
2,472,098 + +0.6
2,472,175 - +0.7
2,472,175 - -0.2
2,472,252 - +0.4
2,472,254 - -0.1
2,472,257 + +0.7
2,472,331 + -0.1
2,472,363 - -1.2
2,472,386 - -0.1
2,472,404 + +1.4
2,472,405 - -0.8
2,472,601 + -1.2
2,472,710 - -3.2
2,472,744 - +0.1
2,472,748 + -0.9
2,472,748 + -2.3
2,472,749 - -1.3
2,472,771 - +0.3
2,472,823 + -1.4
2,472,823 + -0.7
2,472,824 - +0.3
2,472,840 + -0.4
2,472,873 + +0.0
2,472,873 + +0.2
2,472,876 + -0.7
2,472,876 + +0.1
2,472,877 - -0.0
2,472,881 + -0.5
2,472,899 - +0.3
2,472,949 - +0.4
2,472,992 + +0.1
2,473,046 + EX28DRAFT_2442 0.12 +0.7
2,473,052 + EX28DRAFT_2442 0.13 +1.3

Or see this region's nucleotide sequence