Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2440 and EX28DRAFT_2441 are separated by 24 nucleotides EX28DRAFT_2441 and EX28DRAFT_2442 are separated by 800 nucleotides
EX28DRAFT_2440: EX28DRAFT_2440 - FOG: EAL domain, at 2,470,717 to 2,471,415
_2440
EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168
_2441
EX28DRAFT_2442: EX28DRAFT_2442 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,472,969 to 2,473,601
_2442
Position (kb)
2471
2472
2473 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2470.613 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.623 kb on + strand at 2470.624 kb on - strand at 2470.624 kb on - strand at 2470.624 kb on - strand at 2470.666 kb on - strand at 2470.759 kb on + strand at 2470.759 kb on + strand at 2470.760 kb on - strand at 2470.785 kb on + strand at 2470.785 kb on + strand at 2470.786 kb on - strand at 2470.786 kb on - strand at 2470.838 kb on + strand, within EX28DRAFT_2440 at 2470.839 kb on - strand, within EX28DRAFT_2440 at 2471.226 kb on + strand, within EX28DRAFT_2440 at 2471.226 kb on + strand, within EX28DRAFT_2440 at 2471.227 kb on - strand, within EX28DRAFT_2440 at 2471.227 kb on - strand, within EX28DRAFT_2440 at 2471.319 kb on + strand, within EX28DRAFT_2440 at 2471.319 kb on + strand, within EX28DRAFT_2440 at 2471.320 kb on - strand, within EX28DRAFT_2440 at 2471.320 kb on - strand, within EX28DRAFT_2440 at 2471.381 kb on - strand at 2471.383 kb on + strand at 2471.383 kb on + strand at 2471.384 kb on - strand at 2471.500 kb on - strand at 2471.614 kb on + strand, within EX28DRAFT_2441 at 2471.734 kb on - strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.787 kb on + strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.788 kb on - strand, within EX28DRAFT_2441 at 2471.839 kb on + strand, within EX28DRAFT_2441 at 2471.936 kb on + strand, within EX28DRAFT_2441 at 2472.033 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.061 kb on - strand, within EX28DRAFT_2441 at 2472.064 kb on + strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.098 kb on + strand at 2472.175 kb on - strand at 2472.175 kb on - strand at 2472.252 kb on - strand at 2472.254 kb on - strand at 2472.257 kb on + strand at 2472.331 kb on + strand at 2472.363 kb on - strand at 2472.386 kb on - strand at 2472.404 kb on + strand at 2472.405 kb on - strand at 2472.601 kb on + strand at 2472.710 kb on - strand at 2472.744 kb on - strand at 2472.748 kb on + strand at 2472.748 kb on + strand at 2472.749 kb on - strand at 2472.771 kb on - strand at 2472.823 kb on + strand at 2472.823 kb on + strand at 2472.824 kb on - strand at 2472.840 kb on + strand at 2472.873 kb on + strand at 2472.873 kb on + strand at 2472.876 kb on + strand at 2472.876 kb on + strand at 2472.877 kb on - strand at 2472.881 kb on + strand at 2472.899 kb on - strand at 2472.949 kb on - strand at 2472.992 kb on + strand at 2473.046 kb on + strand, within EX28DRAFT_2442 at 2473.052 kb on + strand, within EX28DRAFT_2442
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,470,613 + +0.1 2,470,623 + -0.3 2,470,623 + +1.0 2,470,623 + -0.1 2,470,623 + -0.0 2,470,624 - -0.1 2,470,624 - +0.1 2,470,624 - +0.9 2,470,666 - +0.4 2,470,759 + -0.0 2,470,759 + +0.2 2,470,760 - -0.3 2,470,785 + +0.6 2,470,785 + +0.8 2,470,786 - +0.2 2,470,786 - +2.7 2,470,838 + EX28DRAFT_2440 0.17 +0.2 2,470,839 - EX28DRAFT_2440 0.17 +0.3 2,471,226 + EX28DRAFT_2440 0.73 +0.2 2,471,226 + EX28DRAFT_2440 0.73 +0.3 2,471,227 - EX28DRAFT_2440 0.73 +0.4 2,471,227 - EX28DRAFT_2440 0.73 +0.7 2,471,319 + EX28DRAFT_2440 0.86 -0.4 2,471,319 + EX28DRAFT_2440 0.86 -1.0 2,471,320 - EX28DRAFT_2440 0.86 -1.9 2,471,320 - EX28DRAFT_2440 0.86 -0.2 2,471,381 - +1.6 2,471,383 + -0.5 2,471,383 + -2.9 2,471,384 - -0.0 2,471,500 - +0.1 2,471,614 + EX28DRAFT_2441 0.24 +1.1 2,471,734 - EX28DRAFT_2441 0.40 -1.1 2,471,787 + EX28DRAFT_2441 0.48 +0.6 2,471,787 + EX28DRAFT_2441 0.48 +1.2 2,471,787 + EX28DRAFT_2441 0.48 +0.7 2,471,788 - EX28DRAFT_2441 0.48 -0.4 2,471,788 - EX28DRAFT_2441 0.48 +0.2 2,471,788 - EX28DRAFT_2441 0.48 +0.5 2,471,839 + EX28DRAFT_2441 0.55 +0.6 2,471,936 + EX28DRAFT_2441 0.68 +1.4 2,472,033 + EX28DRAFT_2441 0.81 +0.0 2,472,060 + EX28DRAFT_2441 0.85 +0.5 2,472,060 + EX28DRAFT_2441 0.85 +1.5 2,472,060 + EX28DRAFT_2441 0.85 +0.3 2,472,061 - EX28DRAFT_2441 0.85 +0.5 2,472,064 + EX28DRAFT_2441 0.86 +0.4 2,472,065 - EX28DRAFT_2441 0.86 +0.4 2,472,065 - EX28DRAFT_2441 0.86 +0.4 2,472,098 + +0.6 2,472,175 - +0.7 2,472,175 - -0.2 2,472,252 - +0.4 2,472,254 - -0.1 2,472,257 + +0.7 2,472,331 + -0.1 2,472,363 - -1.2 2,472,386 - -0.1 2,472,404 + +1.4 2,472,405 - -0.8 2,472,601 + -1.2 2,472,710 - -3.2 2,472,744 - +0.1 2,472,748 + -0.9 2,472,748 + -2.3 2,472,749 - -1.3 2,472,771 - +0.3 2,472,823 + -1.4 2,472,823 + -0.7 2,472,824 - +0.3 2,472,840 + -0.4 2,472,873 + +0.0 2,472,873 + +0.2 2,472,876 + -0.7 2,472,876 + +0.1 2,472,877 - -0.0 2,472,881 + -0.5 2,472,899 - +0.3 2,472,949 - +0.4 2,472,992 + +0.1 2,473,046 + EX28DRAFT_2442 0.12 +0.7 2,473,052 + EX28DRAFT_2442 0.13 +1.3
Or see this region's nucleotide sequence