Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2435

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2433 and EX28DRAFT_2434 are separated by 185 nucleotidesEX28DRAFT_2434 and EX28DRAFT_2435 are separated by 149 nucleotidesEX28DRAFT_2435 and EX28DRAFT_2436 are separated by 1 nucleotides EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815 _2433 EX28DRAFT_2434: EX28DRAFT_2434 - Protein of unknown function (DUF1471), at 2,465,001 to 2,465,276 _2434 EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457 _2435 EX28DRAFT_2436: EX28DRAFT_2436 - ABC-type Fe3+ transport system, permease component, at 2,466,459 to 2,468,033 _2436 Position (kb) 2465 2466 2467Strain fitness (log2 ratio) -2 -1 0 1 2at 2464.460 kb on + strand, within EX28DRAFT_2433at 2464.568 kb on + strand, within EX28DRAFT_2433at 2464.815 kb on + strandat 2464.815 kb on + strandat 2464.819 kb on + strandat 2464.819 kb on + strandat 2464.819 kb on + strandat 2464.820 kb on - strandat 2464.910 kb on - strandat 2464.916 kb on + strandat 2465.014 kb on + strandat 2465.040 kb on - strand, within EX28DRAFT_2434at 2465.166 kb on - strand, within EX28DRAFT_2434at 2465.167 kb on + strand, within EX28DRAFT_2434at 2465.239 kb on - strand, within EX28DRAFT_2434at 2465.239 kb on - strand, within EX28DRAFT_2434at 2465.295 kb on + strandat 2465.427 kb on + strandat 2465.504 kb on + strandat 2465.630 kb on + strand, within EX28DRAFT_2435at 2465.631 kb on - strand, within EX28DRAFT_2435at 2465.794 kb on - strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435at 2465.802 kb on + strand, within EX28DRAFT_2435at 2466.322 kb on + strand, within EX28DRAFT_2435at 2466.489 kb on - strandat 2466.490 kb on + strandat 2466.490 kb on + strandat 2466.556 kb on + strandat 2466.556 kb on + strandat 2466.557 kb on - strandat 2466.557 kb on - strandat 2466.819 kb on - strand, within EX28DRAFT_2436at 2466.832 kb on + strand, within EX28DRAFT_2436at 2466.848 kb on + strand, within EX28DRAFT_2436at 2466.848 kb on + strand, within EX28DRAFT_2436at 2466.863 kb on - strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.940 kb on + strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2466.941 kb on - strand, within EX28DRAFT_2436at 2467.134 kb on + strand, within EX28DRAFT_2436at 2467.290 kb on + strand, within EX28DRAFT_2436at 2467.290 kb on + strand, within EX28DRAFT_2436at 2467.356 kb on - strand, within EX28DRAFT_2436at 2467.420 kb on + strand, within EX28DRAFT_2436

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,464,460 + EX28DRAFT_2433 0.84 -0.2
2,464,568 + EX28DRAFT_2433 0.89 +0.9
2,464,815 + +0.2
2,464,815 + +0.1
2,464,819 + +1.4
2,464,819 + -0.4
2,464,819 + -0.8
2,464,820 - -0.3
2,464,910 - +0.5
2,464,916 + +2.2
2,465,014 + -0.2
2,465,040 - EX28DRAFT_2434 0.14 +1.4
2,465,166 - EX28DRAFT_2434 0.60 -0.2
2,465,167 + EX28DRAFT_2434 0.60 -0.3
2,465,239 - EX28DRAFT_2434 0.86 -0.3
2,465,239 - EX28DRAFT_2434 0.86 -0.4
2,465,295 + -0.1
2,465,427 + -0.8
2,465,504 + +0.7
2,465,630 + EX28DRAFT_2435 0.20 -1.7
2,465,631 - EX28DRAFT_2435 0.20 -0.1
2,465,794 - EX28DRAFT_2435 0.36 -0.5
2,465,802 + EX28DRAFT_2435 0.36 +0.3
2,465,802 + EX28DRAFT_2435 0.36 +0.4
2,466,322 + EX28DRAFT_2435 0.87 -0.9
2,466,489 - -0.5
2,466,490 + +0.5
2,466,490 + +0.4
2,466,556 + -0.1
2,466,556 + -0.5
2,466,557 - -0.1
2,466,557 - +1.4
2,466,819 - EX28DRAFT_2436 0.23 -0.0
2,466,832 + EX28DRAFT_2436 0.24 +0.3
2,466,848 + EX28DRAFT_2436 0.25 +0.3
2,466,848 + EX28DRAFT_2436 0.25 +0.2
2,466,863 - EX28DRAFT_2436 0.26 +0.6
2,466,940 + EX28DRAFT_2436 0.31 -0.1
2,466,940 + EX28DRAFT_2436 0.31 -2.5
2,466,940 + EX28DRAFT_2436 0.31 -0.1
2,466,941 - EX28DRAFT_2436 0.31 +1.2
2,466,941 - EX28DRAFT_2436 0.31 +0.1
2,466,941 - EX28DRAFT_2436 0.31 -0.6
2,466,941 - EX28DRAFT_2436 0.31 +0.1
2,466,941 - EX28DRAFT_2436 0.31 -0.4
2,466,941 - EX28DRAFT_2436 0.31 +0.7
2,466,941 - EX28DRAFT_2436 0.31 +0.8
2,467,134 + EX28DRAFT_2436 0.43 +0.8
2,467,290 + EX28DRAFT_2436 0.53 +0.1
2,467,290 + EX28DRAFT_2436 0.53 +0.9
2,467,356 - EX28DRAFT_2436 0.57 -0.5
2,467,420 + EX28DRAFT_2436 0.61 -0.7

Or see this region's nucleotide sequence