Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2433 and EX28DRAFT_2434 are separated by 185 nucleotides EX28DRAFT_2434 and EX28DRAFT_2435 are separated by 149 nucleotides EX28DRAFT_2435 and EX28DRAFT_2436 are separated by 1 nucleotides
EX28DRAFT_2433: EX28DRAFT_2433 - TonB-dependent siderophore receptor, at 2,462,632 to 2,464,815
_2433
EX28DRAFT_2434: EX28DRAFT_2434 - Protein of unknown function (DUF1471), at 2,465,001 to 2,465,276
_2434
EX28DRAFT_2435: EX28DRAFT_2435 - ABC-type spermidine/putrescine transport systems, ATPase components, at 2,465,426 to 2,466,457
_2435
EX28DRAFT_2436: EX28DRAFT_2436 - ABC-type Fe3+ transport system, permease component, at 2,466,459 to 2,468,033
_2436
Position (kb)
2465
2466
2467 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2464.460 kb on + strand, within EX28DRAFT_2433 at 2464.568 kb on + strand, within EX28DRAFT_2433 at 2464.815 kb on + strand at 2464.815 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.819 kb on + strand at 2464.820 kb on - strand at 2464.910 kb on - strand at 2464.916 kb on + strand at 2465.014 kb on + strand at 2465.040 kb on - strand, within EX28DRAFT_2434 at 2465.166 kb on - strand, within EX28DRAFT_2434 at 2465.167 kb on + strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.239 kb on - strand, within EX28DRAFT_2434 at 2465.295 kb on + strand at 2465.427 kb on + strand at 2465.504 kb on + strand at 2465.630 kb on + strand, within EX28DRAFT_2435 at 2465.631 kb on - strand, within EX28DRAFT_2435 at 2465.794 kb on - strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435 at 2465.802 kb on + strand, within EX28DRAFT_2435 at 2466.322 kb on + strand, within EX28DRAFT_2435 at 2466.489 kb on - strand at 2466.490 kb on + strand at 2466.490 kb on + strand at 2466.556 kb on + strand at 2466.556 kb on + strand at 2466.557 kb on - strand at 2466.557 kb on - strand at 2466.819 kb on - strand, within EX28DRAFT_2436 at 2466.832 kb on + strand, within EX28DRAFT_2436 at 2466.848 kb on + strand, within EX28DRAFT_2436 at 2466.848 kb on + strand, within EX28DRAFT_2436 at 2466.863 kb on - strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.940 kb on + strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2466.941 kb on - strand, within EX28DRAFT_2436 at 2467.134 kb on + strand, within EX28DRAFT_2436 at 2467.290 kb on + strand, within EX28DRAFT_2436 at 2467.290 kb on + strand, within EX28DRAFT_2436 at 2467.356 kb on - strand, within EX28DRAFT_2436 at 2467.420 kb on + strand, within EX28DRAFT_2436
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,464,460 + EX28DRAFT_2433 0.84 -0.2 2,464,568 + EX28DRAFT_2433 0.89 +0.9 2,464,815 + +0.2 2,464,815 + +0.1 2,464,819 + +1.4 2,464,819 + -0.4 2,464,819 + -0.8 2,464,820 - -0.3 2,464,910 - +0.5 2,464,916 + +2.2 2,465,014 + -0.2 2,465,040 - EX28DRAFT_2434 0.14 +1.4 2,465,166 - EX28DRAFT_2434 0.60 -0.2 2,465,167 + EX28DRAFT_2434 0.60 -0.3 2,465,239 - EX28DRAFT_2434 0.86 -0.3 2,465,239 - EX28DRAFT_2434 0.86 -0.4 2,465,295 + -0.1 2,465,427 + -0.8 2,465,504 + +0.7 2,465,630 + EX28DRAFT_2435 0.20 -1.7 2,465,631 - EX28DRAFT_2435 0.20 -0.1 2,465,794 - EX28DRAFT_2435 0.36 -0.5 2,465,802 + EX28DRAFT_2435 0.36 +0.3 2,465,802 + EX28DRAFT_2435 0.36 +0.4 2,466,322 + EX28DRAFT_2435 0.87 -0.9 2,466,489 - -0.5 2,466,490 + +0.5 2,466,490 + +0.4 2,466,556 + -0.1 2,466,556 + -0.5 2,466,557 - -0.1 2,466,557 - +1.4 2,466,819 - EX28DRAFT_2436 0.23 -0.0 2,466,832 + EX28DRAFT_2436 0.24 +0.3 2,466,848 + EX28DRAFT_2436 0.25 +0.3 2,466,848 + EX28DRAFT_2436 0.25 +0.2 2,466,863 - EX28DRAFT_2436 0.26 +0.6 2,466,940 + EX28DRAFT_2436 0.31 -0.1 2,466,940 + EX28DRAFT_2436 0.31 -2.5 2,466,940 + EX28DRAFT_2436 0.31 -0.1 2,466,941 - EX28DRAFT_2436 0.31 +1.2 2,466,941 - EX28DRAFT_2436 0.31 +0.1 2,466,941 - EX28DRAFT_2436 0.31 -0.6 2,466,941 - EX28DRAFT_2436 0.31 +0.1 2,466,941 - EX28DRAFT_2436 0.31 -0.4 2,466,941 - EX28DRAFT_2436 0.31 +0.7 2,466,941 - EX28DRAFT_2436 0.31 +0.8 2,467,134 + EX28DRAFT_2436 0.43 +0.8 2,467,290 + EX28DRAFT_2436 0.53 +0.1 2,467,290 + EX28DRAFT_2436 0.53 +0.9 2,467,356 - EX28DRAFT_2436 0.57 -0.5 2,467,420 + EX28DRAFT_2436 0.61 -0.7
Or see this region's nucleotide sequence