Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2418

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2417 and EX28DRAFT_2418 overlap by 71 nucleotidesEX28DRAFT_2418 and EX28DRAFT_2419 are separated by 9 nucleotides EX28DRAFT_2417: EX28DRAFT_2417 - carboxylate-amine ligase, YbdK family, at 2,440,182 to 2,441,303 _2417 EX28DRAFT_2418: EX28DRAFT_2418 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,441,233 to 2,444,388 _2418 EX28DRAFT_2419: EX28DRAFT_2419 - RND family efflux transporter, MFP subunit, at 2,444,398 to 2,445,462 _2419 Position (kb) 2441 2442 2443 2444 2445Strain fitness (log2 ratio) -2 -1 0 1 2at 2440.527 kb on + strand, within EX28DRAFT_2417at 2440.527 kb on + strand, within EX28DRAFT_2417at 2440.529 kb on + strand, within EX28DRAFT_2417at 2440.530 kb on - strand, within EX28DRAFT_2417at 2440.577 kb on - strand, within EX28DRAFT_2417at 2440.626 kb on + strand, within EX28DRAFT_2417at 2440.627 kb on - strand, within EX28DRAFT_2417at 2440.665 kb on - strand, within EX28DRAFT_2417at 2440.689 kb on + strand, within EX28DRAFT_2417at 2440.689 kb on + strand, within EX28DRAFT_2417at 2440.689 kb on + strand, within EX28DRAFT_2417at 2440.689 kb on + strand, within EX28DRAFT_2417at 2440.691 kb on + strand, within EX28DRAFT_2417at 2440.692 kb on - strand, within EX28DRAFT_2417at 2440.692 kb on - strand, within EX28DRAFT_2417at 2440.907 kb on + strand, within EX28DRAFT_2417at 2440.990 kb on - strand, within EX28DRAFT_2417at 2440.991 kb on + strand, within EX28DRAFT_2417at 2440.992 kb on - strand, within EX28DRAFT_2417at 2441.195 kb on - strandat 2441.583 kb on + strand, within EX28DRAFT_2418at 2441.621 kb on - strand, within EX28DRAFT_2418at 2441.629 kb on + strand, within EX28DRAFT_2418at 2441.640 kb on - strand, within EX28DRAFT_2418at 2441.640 kb on - strand, within EX28DRAFT_2418at 2441.846 kb on + strand, within EX28DRAFT_2418at 2441.846 kb on + strand, within EX28DRAFT_2418at 2441.963 kb on + strand, within EX28DRAFT_2418at 2441.964 kb on - strand, within EX28DRAFT_2418at 2441.964 kb on - strand, within EX28DRAFT_2418at 2442.113 kb on + strand, within EX28DRAFT_2418at 2442.114 kb on - strand, within EX28DRAFT_2418at 2442.724 kb on - strand, within EX28DRAFT_2418at 2442.724 kb on - strand, within EX28DRAFT_2418at 2442.802 kb on + strand, within EX28DRAFT_2418at 2442.802 kb on + strand, within EX28DRAFT_2418at 2442.866 kb on + strand, within EX28DRAFT_2418at 2443.192 kb on - strand, within EX28DRAFT_2418at 2443.418 kb on + strand, within EX28DRAFT_2418at 2443.419 kb on - strand, within EX28DRAFT_2418at 2443.511 kb on + strand, within EX28DRAFT_2418at 2443.524 kb on - strand, within EX28DRAFT_2418at 2443.841 kb on + strand, within EX28DRAFT_2418at 2443.919 kb on + strand, within EX28DRAFT_2418at 2443.919 kb on + strand, within EX28DRAFT_2418at 2443.919 kb on + strand, within EX28DRAFT_2418at 2443.920 kb on - strand, within EX28DRAFT_2418at 2443.920 kb on - strand, within EX28DRAFT_2418at 2444.157 kb on + strandat 2444.157 kb on + strandat 2444.157 kb on + strandat 2444.158 kb on - strandat 2444.158 kb on - strandat 2444.158 kb on - strandat 2444.158 kb on - strandat 2444.159 kb on + strandat 2444.159 kb on + strandat 2444.159 kb on + strandat 2444.159 kb on + strandat 2444.159 kb on + strandat 2444.160 kb on - strandat 2444.160 kb on - strandat 2444.160 kb on - strandat 2444.160 kb on - strandat 2444.160 kb on - strandat 2444.160 kb on - strandat 2444.161 kb on + strandat 2444.161 kb on + strandat 2444.161 kb on + strandat 2444.161 kb on + strandat 2444.161 kb on + strandat 2444.161 kb on + strandat 2444.162 kb on - strandat 2444.162 kb on - strandat 2444.399 kb on + strandat 2444.484 kb on + strandat 2444.993 kb on + strand, within EX28DRAFT_2419at 2444.993 kb on + strand, within EX28DRAFT_2419at 2444.994 kb on - strand, within EX28DRAFT_2419at 2445.109 kb on - strand, within EX28DRAFT_2419at 2445.176 kb on - strand, within EX28DRAFT_2419at 2445.176 kb on - strand, within EX28DRAFT_2419at 2445.254 kb on + strand, within EX28DRAFT_2419at 2445.254 kb on + strand, within EX28DRAFT_2419at 2445.254 kb on + strand, within EX28DRAFT_2419

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,440,527 + EX28DRAFT_2417 0.31 -0.6
2,440,527 + EX28DRAFT_2417 0.31 +0.7
2,440,529 + EX28DRAFT_2417 0.31 -1.7
2,440,530 - EX28DRAFT_2417 0.31 -0.1
2,440,577 - EX28DRAFT_2417 0.35 -0.4
2,440,626 + EX28DRAFT_2417 0.40 -1.6
2,440,627 - EX28DRAFT_2417 0.40 -0.8
2,440,665 - EX28DRAFT_2417 0.43 +0.5
2,440,689 + EX28DRAFT_2417 0.45 -0.4
2,440,689 + EX28DRAFT_2417 0.45 -0.1
2,440,689 + EX28DRAFT_2417 0.45 -2.0
2,440,689 + EX28DRAFT_2417 0.45 -0.3
2,440,691 + EX28DRAFT_2417 0.45 -0.2
2,440,692 - EX28DRAFT_2417 0.45 +0.0
2,440,692 - EX28DRAFT_2417 0.45 -0.3
2,440,907 + EX28DRAFT_2417 0.65 +0.9
2,440,990 - EX28DRAFT_2417 0.72 +0.5
2,440,991 + EX28DRAFT_2417 0.72 +0.1
2,440,992 - EX28DRAFT_2417 0.72 -1.0
2,441,195 - +0.4
2,441,583 + EX28DRAFT_2418 0.11 +0.0
2,441,621 - EX28DRAFT_2418 0.12 +0.2
2,441,629 + EX28DRAFT_2418 0.13 -0.2
2,441,640 - EX28DRAFT_2418 0.13 -0.5
2,441,640 - EX28DRAFT_2418 0.13 -0.2
2,441,846 + EX28DRAFT_2418 0.19 +2.2
2,441,846 + EX28DRAFT_2418 0.19 +0.3
2,441,963 + EX28DRAFT_2418 0.23 +1.3
2,441,964 - EX28DRAFT_2418 0.23 +0.5
2,441,964 - EX28DRAFT_2418 0.23 +0.3
2,442,113 + EX28DRAFT_2418 0.28 +0.2
2,442,114 - EX28DRAFT_2418 0.28 +0.3
2,442,724 - EX28DRAFT_2418 0.47 -0.1
2,442,724 - EX28DRAFT_2418 0.47 +0.8
2,442,802 + EX28DRAFT_2418 0.50 -2.0
2,442,802 + EX28DRAFT_2418 0.50 +0.1
2,442,866 + EX28DRAFT_2418 0.52 +0.9
2,443,192 - EX28DRAFT_2418 0.62 +0.7
2,443,418 + EX28DRAFT_2418 0.69 -0.0
2,443,419 - EX28DRAFT_2418 0.69 -0.3
2,443,511 + EX28DRAFT_2418 0.72 -0.5
2,443,524 - EX28DRAFT_2418 0.73 -0.1
2,443,841 + EX28DRAFT_2418 0.83 +0.4
2,443,919 + EX28DRAFT_2418 0.85 +0.4
2,443,919 + EX28DRAFT_2418 0.85 -0.4
2,443,919 + EX28DRAFT_2418 0.85 +0.5
2,443,920 - EX28DRAFT_2418 0.85 -0.7
2,443,920 - EX28DRAFT_2418 0.85 -0.6
2,444,157 + +0.8
2,444,157 + +0.2
2,444,157 + -0.6
2,444,158 - -0.0
2,444,158 - +0.8
2,444,158 - -0.3
2,444,158 - +2.2
2,444,159 + -0.6
2,444,159 + +0.7
2,444,159 + -0.3
2,444,159 + +1.3
2,444,159 + +0.1
2,444,160 - -0.0
2,444,160 - +1.0
2,444,160 - +0.7
2,444,160 - +0.6
2,444,160 - -1.2
2,444,160 - +0.1
2,444,161 + +0.0
2,444,161 + +0.9
2,444,161 + +0.5
2,444,161 + -0.0
2,444,161 + -0.1
2,444,161 + +0.2
2,444,162 - +2.2
2,444,162 - +0.1
2,444,399 + -0.1
2,444,484 + -0.4
2,444,993 + EX28DRAFT_2419 0.56 +0.0
2,444,993 + EX28DRAFT_2419 0.56 -1.2
2,444,994 - EX28DRAFT_2419 0.56 +0.3
2,445,109 - EX28DRAFT_2419 0.67 +0.7
2,445,176 - EX28DRAFT_2419 0.73 +0.1
2,445,176 - EX28DRAFT_2419 0.73 +0.3
2,445,254 + EX28DRAFT_2419 0.80 +0.2
2,445,254 + EX28DRAFT_2419 0.80 +0.0
2,445,254 + EX28DRAFT_2419 0.80 -0.0

Or see this region's nucleotide sequence