Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2403

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2402 and EX28DRAFT_2403 are separated by 13 nucleotidesEX28DRAFT_2403 and EX28DRAFT_2404 are separated by 105 nucleotides EX28DRAFT_2402: EX28DRAFT_2402 - acetolactate synthase, large subunit (EC 2.2.1.6), at 2,427,399 to 2,429,078 _2402 EX28DRAFT_2403: EX28DRAFT_2403 - alpha-acetolactate decarboxylase, at 2,429,092 to 2,429,871 _2403 EX28DRAFT_2404: EX28DRAFT_2404 - Transcriptional regulator, at 2,429,977 to 2,430,858 _2404 Position (kb) 2429 2430Strain fitness (log2 ratio) -2 -1 0 1at 2428.138 kb on + strand, within EX28DRAFT_2402at 2428.138 kb on + strand, within EX28DRAFT_2402at 2428.138 kb on + strand, within EX28DRAFT_2402at 2428.139 kb on - strand, within EX28DRAFT_2402at 2428.139 kb on - strand, within EX28DRAFT_2402at 2428.139 kb on - strand, within EX28DRAFT_2402at 2428.142 kb on + strand, within EX28DRAFT_2402at 2428.142 kb on + strand, within EX28DRAFT_2402at 2428.142 kb on + strand, within EX28DRAFT_2402at 2428.142 kb on + strand, within EX28DRAFT_2402at 2428.143 kb on - strand, within EX28DRAFT_2402at 2428.245 kb on - strand, within EX28DRAFT_2402at 2428.354 kb on + strand, within EX28DRAFT_2402at 2428.355 kb on - strand, within EX28DRAFT_2402at 2428.355 kb on - strand, within EX28DRAFT_2402at 2428.440 kb on + strand, within EX28DRAFT_2402at 2428.441 kb on - strand, within EX28DRAFT_2402at 2428.441 kb on - strand, within EX28DRAFT_2402at 2428.441 kb on - strand, within EX28DRAFT_2402at 2428.569 kb on - strand, within EX28DRAFT_2402at 2428.678 kb on + strand, within EX28DRAFT_2402at 2428.679 kb on - strand, within EX28DRAFT_2402at 2429.094 kb on - strandat 2429.640 kb on - strand, within EX28DRAFT_2403at 2429.755 kb on + strand, within EX28DRAFT_2403at 2429.770 kb on + strand, within EX28DRAFT_2403at 2429.894 kb on - strandat 2429.945 kb on + strandat 2429.946 kb on - strandat 2429.972 kb on + strandat 2429.972 kb on + strandat 2429.972 kb on + strandat 2429.973 kb on - strandat 2430.121 kb on - strand, within EX28DRAFT_2404at 2430.170 kb on - strand, within EX28DRAFT_2404at 2430.363 kb on + strand, within EX28DRAFT_2404at 2430.363 kb on + strand, within EX28DRAFT_2404at 2430.364 kb on - strand, within EX28DRAFT_2404at 2430.364 kb on - strand, within EX28DRAFT_2404at 2430.776 kb on - strandat 2430.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,428,138 + EX28DRAFT_2402 0.44 +1.7
2,428,138 + EX28DRAFT_2402 0.44 -0.2
2,428,138 + EX28DRAFT_2402 0.44 -0.2
2,428,139 - EX28DRAFT_2402 0.44 +0.4
2,428,139 - EX28DRAFT_2402 0.44 +0.1
2,428,139 - EX28DRAFT_2402 0.44 +0.4
2,428,142 + EX28DRAFT_2402 0.44 +0.3
2,428,142 + EX28DRAFT_2402 0.44 -1.4
2,428,142 + EX28DRAFT_2402 0.44 -0.4
2,428,142 + EX28DRAFT_2402 0.44 -0.5
2,428,143 - EX28DRAFT_2402 0.44 +0.7
2,428,245 - EX28DRAFT_2402 0.50 +0.1
2,428,354 + EX28DRAFT_2402 0.57 +0.8
2,428,355 - EX28DRAFT_2402 0.57 -1.2
2,428,355 - EX28DRAFT_2402 0.57 -0.5
2,428,440 + EX28DRAFT_2402 0.62 +0.5
2,428,441 - EX28DRAFT_2402 0.62 +0.2
2,428,441 - EX28DRAFT_2402 0.62 -0.4
2,428,441 - EX28DRAFT_2402 0.62 -1.6
2,428,569 - EX28DRAFT_2402 0.70 -2.3
2,428,678 + EX28DRAFT_2402 0.76 +0.7
2,428,679 - EX28DRAFT_2402 0.76 +0.5
2,429,094 - +0.0
2,429,640 - EX28DRAFT_2403 0.70 +0.0
2,429,755 + EX28DRAFT_2403 0.85 -0.3
2,429,770 + EX28DRAFT_2403 0.87 -0.7
2,429,894 - -0.6
2,429,945 + -0.3
2,429,946 - -0.1
2,429,972 + +1.2
2,429,972 + +1.6
2,429,972 + +0.3
2,429,973 - -0.5
2,430,121 - EX28DRAFT_2404 0.16 -0.8
2,430,170 - EX28DRAFT_2404 0.22 +1.7
2,430,363 + EX28DRAFT_2404 0.44 +0.1
2,430,363 + EX28DRAFT_2404 0.44 +0.2
2,430,364 - EX28DRAFT_2404 0.44 +0.1
2,430,364 - EX28DRAFT_2404 0.44 -0.4
2,430,776 - +0.3
2,430,865 + +0.0

Or see this region's nucleotide sequence