Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2390 and EX28DRAFT_2391 overlap by 4 nucleotides EX28DRAFT_2391 and EX28DRAFT_2392 are separated by 328 nucleotides EX28DRAFT_2392 and EX28DRAFT_2393 are separated by 33 nucleotides
EX28DRAFT_2390: EX28DRAFT_2390 - RNA polymerase sigma factor, sigma-70 family, at 2,415,960 to 2,416,514
_2390
EX28DRAFT_2391: EX28DRAFT_2391 - Uncharacterized protein conserved in bacteria, at 2,416,511 to 2,417,158
_2391
EX28DRAFT_2392: EX28DRAFT_2392 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,417,487 to 2,418,227
_2392
EX28DRAFT_2393: EX28DRAFT_2393 - Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase], at 2,418,261 to 2,419,955
_2393
Position (kb)
2417
2418
2419 Strain fitness (log2 ratio)
-2
-1
0
1 at 2416.554 kb on - strand at 2416.763 kb on + strand, within EX28DRAFT_2391 at 2416.978 kb on + strand, within EX28DRAFT_2391 at 2416.979 kb on - strand, within EX28DRAFT_2391 at 2416.979 kb on - strand, within EX28DRAFT_2391 at 2417.027 kb on - strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.028 kb on + strand, within EX28DRAFT_2391 at 2417.141 kb on + strand at 2417.194 kb on - strand at 2417.261 kb on - strand at 2417.267 kb on + strand at 2417.517 kb on - strand at 2417.571 kb on - strand, within EX28DRAFT_2392 at 2417.636 kb on + strand, within EX28DRAFT_2392 at 2417.900 kb on + strand, within EX28DRAFT_2392 at 2417.952 kb on + strand, within EX28DRAFT_2392 at 2417.996 kb on - strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.032 kb on + strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.033 kb on - strand, within EX28DRAFT_2392 at 2418.155 kb on - strand at 2418.155 kb on - strand at 2418.196 kb on + strand at 2418.196 kb on + strand at 2418.236 kb on - strand at 2418.423 kb on + strand at 2418.423 kb on + strand at 2418.424 kb on - strand at 2418.501 kb on - strand, within EX28DRAFT_2393 at 2418.551 kb on + strand, within EX28DRAFT_2393 at 2418.612 kb on + strand, within EX28DRAFT_2393 at 2418.766 kb on + strand, within EX28DRAFT_2393 at 2418.834 kb on + strand, within EX28DRAFT_2393 at 2418.835 kb on - strand, within EX28DRAFT_2393 at 2419.049 kb on + strand, within EX28DRAFT_2393 at 2419.092 kb on + strand, within EX28DRAFT_2393 at 2419.093 kb on - strand, within EX28DRAFT_2393 at 2419.106 kb on + strand, within EX28DRAFT_2393 at 2419.131 kb on - strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.140 kb on + strand, within EX28DRAFT_2393 at 2419.179 kb on + strand, within EX28DRAFT_2393 at 2419.218 kb on + strand, within EX28DRAFT_2393
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,416,554 - -0.0 2,416,763 + EX28DRAFT_2391 0.39 -0.3 2,416,978 + EX28DRAFT_2391 0.72 -1.4 2,416,979 - EX28DRAFT_2391 0.72 -2.0 2,416,979 - EX28DRAFT_2391 0.72 +0.6 2,417,027 - EX28DRAFT_2391 0.80 +0.5 2,417,028 + EX28DRAFT_2391 0.80 -2.3 2,417,028 + EX28DRAFT_2391 0.80 +0.3 2,417,028 + EX28DRAFT_2391 0.80 +0.1 2,417,141 + -0.4 2,417,194 - -0.9 2,417,261 - +0.2 2,417,267 + +0.1 2,417,517 - -0.1 2,417,571 - EX28DRAFT_2392 0.11 -0.0 2,417,636 + EX28DRAFT_2392 0.20 +0.1 2,417,900 + EX28DRAFT_2392 0.56 -0.8 2,417,952 + EX28DRAFT_2392 0.63 +0.6 2,417,996 - EX28DRAFT_2392 0.69 -0.2 2,418,032 + EX28DRAFT_2392 0.74 -0.6 2,418,032 + EX28DRAFT_2392 0.74 -1.1 2,418,033 - EX28DRAFT_2392 0.74 -0.6 2,418,033 - EX28DRAFT_2392 0.74 +0.1 2,418,033 - EX28DRAFT_2392 0.74 +0.2 2,418,155 - +0.4 2,418,155 - -0.7 2,418,196 + -0.6 2,418,196 + -0.2 2,418,236 - -0.5 2,418,423 + -0.1 2,418,423 + +0.5 2,418,424 - +0.1 2,418,501 - EX28DRAFT_2393 0.14 +0.4 2,418,551 + EX28DRAFT_2393 0.17 -0.3 2,418,612 + EX28DRAFT_2393 0.21 +1.5 2,418,766 + EX28DRAFT_2393 0.30 -0.5 2,418,834 + EX28DRAFT_2393 0.34 +0.8 2,418,835 - EX28DRAFT_2393 0.34 -0.3 2,419,049 + EX28DRAFT_2393 0.46 -0.6 2,419,092 + EX28DRAFT_2393 0.49 +0.7 2,419,093 - EX28DRAFT_2393 0.49 +1.5 2,419,106 + EX28DRAFT_2393 0.50 -0.7 2,419,131 - EX28DRAFT_2393 0.51 +0.1 2,419,140 + EX28DRAFT_2393 0.52 +1.6 2,419,140 + EX28DRAFT_2393 0.52 +0.2 2,419,140 + EX28DRAFT_2393 0.52 +0.5 2,419,179 + EX28DRAFT_2393 0.54 +0.2 2,419,218 + EX28DRAFT_2393 0.56 +0.6
Or see this region's nucleotide sequence