Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2383 and EX28DRAFT_2384 are separated by 85 nucleotides EX28DRAFT_2384 and EX28DRAFT_2385 are separated by 114 nucleotides
EX28DRAFT_2383: EX28DRAFT_2383 - TonB-dependent siderophore receptor, at 2,406,208 to 2,408,448
_2383
EX28DRAFT_2384: EX28DRAFT_2384 - Phosphopantetheinyl transferase component of siderophore synthetase, at 2,408,534 to 2,409,181
_2384
EX28DRAFT_2385: EX28DRAFT_2385 - choline/carnitine/betaine transport, at 2,409,296 to 2,411,329
_2385
Position (kb)
2408
2409
2410 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2407.537 kb on - strand, within EX28DRAFT_2383 at 2407.626 kb on + strand, within EX28DRAFT_2383 at 2407.690 kb on + strand, within EX28DRAFT_2383 at 2407.747 kb on + strand, within EX28DRAFT_2383 at 2407.748 kb on - strand, within EX28DRAFT_2383 at 2407.748 kb on - strand, within EX28DRAFT_2383 at 2407.930 kb on + strand, within EX28DRAFT_2383 at 2408.008 kb on - strand, within EX28DRAFT_2383 at 2408.025 kb on - strand, within EX28DRAFT_2383 at 2408.029 kb on + strand, within EX28DRAFT_2383 at 2408.029 kb on + strand, within EX28DRAFT_2383 at 2408.029 kb on + strand, within EX28DRAFT_2383 at 2408.029 kb on + strand, within EX28DRAFT_2383 at 2408.030 kb on - strand, within EX28DRAFT_2383 at 2408.030 kb on - strand, within EX28DRAFT_2383 at 2408.030 kb on - strand, within EX28DRAFT_2383 at 2408.030 kb on - strand, within EX28DRAFT_2383 at 2408.030 kb on - strand, within EX28DRAFT_2383 at 2408.086 kb on + strand, within EX28DRAFT_2383 at 2408.149 kb on - strand, within EX28DRAFT_2383 at 2408.149 kb on - strand, within EX28DRAFT_2383 at 2408.179 kb on + strand, within EX28DRAFT_2383 at 2408.179 kb on + strand, within EX28DRAFT_2383 at 2408.185 kb on + strand, within EX28DRAFT_2383 at 2408.186 kb on - strand, within EX28DRAFT_2383 at 2408.186 kb on - strand, within EX28DRAFT_2383 at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.371 kb on + strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.372 kb on - strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.373 kb on + strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.374 kb on - strand at 2408.378 kb on - strand at 2408.394 kb on + strand at 2408.394 kb on + strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.395 kb on - strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.398 kb on + strand at 2408.399 kb on - strand at 2408.399 kb on - strand at 2408.399 kb on - strand at 2408.401 kb on - strand at 2408.449 kb on + strand at 2408.512 kb on + strand at 2408.844 kb on + strand, within EX28DRAFT_2384 at 2408.849 kb on - strand, within EX28DRAFT_2384 at 2408.977 kb on + strand, within EX28DRAFT_2384 at 2409.222 kb on - strand at 2409.274 kb on + strand at 2409.275 kb on - strand at 2409.276 kb on + strand at 2409.277 kb on - strand at 2409.277 kb on - strand at 2409.277 kb on - strand at 2409.281 kb on + strand at 2409.281 kb on + strand at 2409.281 kb on + strand at 2409.409 kb on - strand at 2409.417 kb on - strand at 2409.466 kb on - strand at 2409.466 kb on - strand at 2409.497 kb on - strand at 2409.497 kb on - strand at 2409.497 kb on - strand at 2409.628 kb on - strand, within EX28DRAFT_2385 at 2409.706 kb on - strand, within EX28DRAFT_2385 at 2409.829 kb on + strand, within EX28DRAFT_2385 at 2409.839 kb on - strand, within EX28DRAFT_2385 at 2409.839 kb on - strand, within EX28DRAFT_2385 at 2409.840 kb on + strand, within EX28DRAFT_2385 at 2409.841 kb on - strand, within EX28DRAFT_2385 at 2409.841 kb on - strand, within EX28DRAFT_2385 at 2410.068 kb on + strand, within EX28DRAFT_2385 at 2410.141 kb on - strand, within EX28DRAFT_2385
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,407,537 - EX28DRAFT_2383 0.59 +0.0 2,407,626 + EX28DRAFT_2383 0.63 -0.7 2,407,690 + EX28DRAFT_2383 0.66 -0.8 2,407,747 + EX28DRAFT_2383 0.69 -0.2 2,407,748 - EX28DRAFT_2383 0.69 +0.4 2,407,748 - EX28DRAFT_2383 0.69 -2.8 2,407,930 + EX28DRAFT_2383 0.77 -0.1 2,408,008 - EX28DRAFT_2383 0.80 -0.0 2,408,025 - EX28DRAFT_2383 0.81 +0.2 2,408,029 + EX28DRAFT_2383 0.81 +1.2 2,408,029 + EX28DRAFT_2383 0.81 -1.0 2,408,029 + EX28DRAFT_2383 0.81 +0.0 2,408,029 + EX28DRAFT_2383 0.81 -1.1 2,408,030 - EX28DRAFT_2383 0.81 -0.2 2,408,030 - EX28DRAFT_2383 0.81 +0.1 2,408,030 - EX28DRAFT_2383 0.81 +0.8 2,408,030 - EX28DRAFT_2383 0.81 +0.1 2,408,030 - EX28DRAFT_2383 0.81 +0.6 2,408,086 + EX28DRAFT_2383 0.84 +0.4 2,408,149 - EX28DRAFT_2383 0.87 +0.4 2,408,149 - EX28DRAFT_2383 0.87 +0.6 2,408,179 + EX28DRAFT_2383 0.88 -0.6 2,408,179 + EX28DRAFT_2383 0.88 +0.2 2,408,185 + EX28DRAFT_2383 0.88 -0.2 2,408,186 - EX28DRAFT_2383 0.88 +0.4 2,408,186 - EX28DRAFT_2383 0.88 +1.8 2,408,371 + +1.7 2,408,371 + +0.6 2,408,371 + +0.4 2,408,371 + -0.2 2,408,371 + -0.2 2,408,371 + -0.3 2,408,372 - +0.0 2,408,372 - -0.1 2,408,372 - +0.5 2,408,372 - +0.7 2,408,372 - +0.2 2,408,372 - +0.0 2,408,372 - +1.6 2,408,373 + +0.3 2,408,373 + -0.3 2,408,373 + +1.5 2,408,373 + -0.0 2,408,374 - +0.1 2,408,374 - +0.2 2,408,374 - -0.1 2,408,374 - +0.2 2,408,374 - +0.7 2,408,378 - +0.4 2,408,394 + +0.9 2,408,394 + -0.3 2,408,395 - -0.8 2,408,395 - +0.3 2,408,395 - +0.4 2,408,395 - +0.0 2,408,395 - +0.0 2,408,398 + -0.1 2,408,398 + +0.0 2,408,398 + +0.8 2,408,398 + +1.2 2,408,398 + +1.4 2,408,398 + -0.4 2,408,398 + -0.1 2,408,398 + -0.2 2,408,399 - +0.0 2,408,399 - +1.3 2,408,399 - -0.4 2,408,401 - +0.5 2,408,449 + -0.7 2,408,512 + -1.2 2,408,844 + EX28DRAFT_2384 0.48 -0.7 2,408,849 - EX28DRAFT_2384 0.49 -0.9 2,408,977 + EX28DRAFT_2384 0.68 -0.5 2,409,222 - +0.3 2,409,274 + +1.2 2,409,275 - +0.2 2,409,276 + -0.7 2,409,277 - +0.1 2,409,277 - +0.1 2,409,277 - -0.8 2,409,281 + -0.0 2,409,281 + -0.1 2,409,281 + +0.1 2,409,409 - -0.4 2,409,417 - +0.1 2,409,466 - -0.2 2,409,466 - -0.9 2,409,497 - -0.7 2,409,497 - +0.1 2,409,497 - -0.2 2,409,628 - EX28DRAFT_2385 0.16 +0.7 2,409,706 - EX28DRAFT_2385 0.20 -0.2 2,409,829 + EX28DRAFT_2385 0.26 +0.2 2,409,839 - EX28DRAFT_2385 0.27 +0.2 2,409,839 - EX28DRAFT_2385 0.27 -0.3 2,409,840 + EX28DRAFT_2385 0.27 -0.8 2,409,841 - EX28DRAFT_2385 0.27 -0.5 2,409,841 - EX28DRAFT_2385 0.27 -1.3 2,410,068 + EX28DRAFT_2385 0.38 +1.0 2,410,141 - EX28DRAFT_2385 0.42 +1.2
Or see this region's nucleotide sequence