Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2374 and EX28DRAFT_2375 are separated by 188 nucleotides EX28DRAFT_2375 and EX28DRAFT_2376 are separated by 46 nucleotides
EX28DRAFT_2374: EX28DRAFT_2374 - isochorismate synthase (EC 5.4.4.2), at 2,394,183 to 2,395,358
_2374
EX28DRAFT_2375: EX28DRAFT_2375 - ABC-type Fe2+-enterobactin transport system, periplasmic component, at 2,395,547 to 2,396,506
_2375
EX28DRAFT_2376: EX28DRAFT_2376 - Arabinose efflux permease, at 2,396,553 to 2,397,800
_2376
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-1
0
1 at 2394.668 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.691 kb on - strand, within EX28DRAFT_2374 at 2395.037 kb on - strand, within EX28DRAFT_2374 at 2395.269 kb on - strand at 2395.289 kb on + strand at 2395.290 kb on - strand at 2395.290 kb on - strand at 2395.425 kb on - strand at 2395.461 kb on + strand at 2395.461 kb on + strand at 2395.462 kb on - strand at 2395.467 kb on - strand at 2395.585 kb on - strand at 2395.585 kb on - strand at 2395.819 kb on + strand, within EX28DRAFT_2375 at 2395.851 kb on - strand, within EX28DRAFT_2375 at 2396.219 kb on - strand, within EX28DRAFT_2375 at 2396.281 kb on + strand, within EX28DRAFT_2375 at 2396.397 kb on + strand, within EX28DRAFT_2375 at 2396.456 kb on + strand at 2396.460 kb on - strand at 2396.473 kb on - strand at 2396.475 kb on + strand at 2396.475 kb on + strand at 2396.476 kb on - strand at 2396.476 kb on - strand at 2396.500 kb on + strand at 2396.501 kb on - strand at 2396.501 kb on - strand at 2396.501 kb on - strand at 2396.803 kb on + strand, within EX28DRAFT_2376 at 2396.843 kb on + strand, within EX28DRAFT_2376 at 2396.930 kb on + strand, within EX28DRAFT_2376 at 2396.931 kb on - strand, within EX28DRAFT_2376 at 2397.171 kb on + strand, within EX28DRAFT_2376 at 2397.461 kb on - strand, within EX28DRAFT_2376
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,394,668 + EX28DRAFT_2374 0.41 -0.3 2,394,690 + EX28DRAFT_2374 0.43 -0.0 2,394,690 + EX28DRAFT_2374 0.43 -0.0 2,394,690 + EX28DRAFT_2374 0.43 +0.1 2,394,691 - EX28DRAFT_2374 0.43 +1.2 2,395,037 - EX28DRAFT_2374 0.73 -0.2 2,395,269 - +0.1 2,395,289 + -0.9 2,395,290 - +0.5 2,395,290 - -1.0 2,395,425 - -1.2 2,395,461 + -0.1 2,395,461 + -0.1 2,395,462 - +0.1 2,395,467 - +0.6 2,395,585 - -0.1 2,395,585 - +0.3 2,395,819 + EX28DRAFT_2375 0.28 +0.9 2,395,851 - EX28DRAFT_2375 0.32 +1.3 2,396,219 - EX28DRAFT_2375 0.70 -0.3 2,396,281 + EX28DRAFT_2375 0.76 +0.6 2,396,397 + EX28DRAFT_2375 0.89 +0.8 2,396,456 + +0.6 2,396,460 - -0.4 2,396,473 - +0.6 2,396,475 + +0.6 2,396,475 + -0.2 2,396,476 - +0.1 2,396,476 - -0.1 2,396,500 + +0.1 2,396,501 - +0.2 2,396,501 - +1.1 2,396,501 - -0.7 2,396,803 + EX28DRAFT_2376 0.20 +0.0 2,396,843 + EX28DRAFT_2376 0.23 +0.3 2,396,930 + EX28DRAFT_2376 0.30 +0.0 2,396,931 - EX28DRAFT_2376 0.30 +0.6 2,397,171 + EX28DRAFT_2376 0.50 +0.1 2,397,461 - EX28DRAFT_2376 0.73 -0.1
Or see this region's nucleotide sequence