Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2331

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2330 and EX28DRAFT_2331 are separated by 139 nucleotidesEX28DRAFT_2331 and EX28DRAFT_2332 are separated by 106 nucleotidesEX28DRAFT_2332 and EX28DRAFT_2333 are separated by 94 nucleotides EX28DRAFT_2330: EX28DRAFT_2330 - rare lipoprotein A, at 2,355,058 to 2,356,170 _2330 EX28DRAFT_2331: EX28DRAFT_2331 - D-alanyl-D-alanine carboxypeptidase, at 2,356,310 to 2,357,521 _2331 EX28DRAFT_2332: EX28DRAFT_2332 - Uncharacterized conserved protein, at 2,357,628 to 2,357,891 _2332 EX28DRAFT_2333: EX28DRAFT_2333 - lipoate-protein ligase B, at 2,357,986 to 2,358,627 _2333 Position (kb) 2356 2357 2358Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2355.316 kb on + strand, within EX28DRAFT_2330at 2355.317 kb on - strand, within EX28DRAFT_2330at 2355.317 kb on - strand, within EX28DRAFT_2330at 2355.634 kb on + strand, within EX28DRAFT_2330at 2355.635 kb on - strand, within EX28DRAFT_2330at 2355.635 kb on - strand, within EX28DRAFT_2330at 2355.953 kb on - strand, within EX28DRAFT_2330at 2355.953 kb on - strand, within EX28DRAFT_2330at 2355.953 kb on - strand, within EX28DRAFT_2330at 2355.966 kb on - strand, within EX28DRAFT_2330at 2356.000 kb on + strand, within EX28DRAFT_2330at 2356.168 kb on + strandat 2356.169 kb on - strandat 2356.203 kb on + strandat 2356.228 kb on + strandat 2356.229 kb on - strandat 2356.250 kb on + strandat 2356.251 kb on - strandat 2356.262 kb on + strandat 2356.263 kb on - strandat 2356.263 kb on - strandat 2356.265 kb on + strandat 2356.265 kb on + strandat 2356.266 kb on - strandat 2356.266 kb on - strandat 2356.266 kb on - strandat 2356.299 kb on + strandat 2356.299 kb on + strandat 2356.299 kb on + strandat 2356.411 kb on + strandat 2356.454 kb on + strand, within EX28DRAFT_2331at 2356.454 kb on + strand, within EX28DRAFT_2331at 2356.455 kb on - strand, within EX28DRAFT_2331at 2356.455 kb on - strand, within EX28DRAFT_2331at 2356.469 kb on + strand, within EX28DRAFT_2331at 2356.550 kb on + strand, within EX28DRAFT_2331at 2356.551 kb on - strand, within EX28DRAFT_2331at 2356.551 kb on - strand, within EX28DRAFT_2331at 2356.802 kb on + strand, within EX28DRAFT_2331at 2356.802 kb on + strand, within EX28DRAFT_2331at 2356.802 kb on + strand, within EX28DRAFT_2331at 2356.845 kb on + strand, within EX28DRAFT_2331at 2356.928 kb on - strand, within EX28DRAFT_2331at 2356.934 kb on + strand, within EX28DRAFT_2331at 2356.935 kb on - strand, within EX28DRAFT_2331at 2356.940 kb on - strand, within EX28DRAFT_2331at 2356.943 kb on + strand, within EX28DRAFT_2331at 2356.944 kb on - strand, within EX28DRAFT_2331at 2356.944 kb on - strand, within EX28DRAFT_2331at 2356.944 kb on - strand, within EX28DRAFT_2331at 2356.972 kb on + strand, within EX28DRAFT_2331at 2356.998 kb on + strand, within EX28DRAFT_2331at 2357.033 kb on - strand, within EX28DRAFT_2331at 2357.033 kb on - strand, within EX28DRAFT_2331at 2357.060 kb on + strand, within EX28DRAFT_2331at 2357.285 kb on + strand, within EX28DRAFT_2331at 2357.330 kb on + strand, within EX28DRAFT_2331at 2357.330 kb on + strand, within EX28DRAFT_2331at 2357.487 kb on - strandat 2357.492 kb on - strandat 2357.597 kb on + strandat 2357.941 kb on + strandat 2357.942 kb on - strandat 2357.942 kb on - strandat 2357.943 kb on + strandat 2358.127 kb on - strand, within EX28DRAFT_2333

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,355,316 + EX28DRAFT_2330 0.23 +0.5
2,355,317 - EX28DRAFT_2330 0.23 +0.1
2,355,317 - EX28DRAFT_2330 0.23 -0.8
2,355,634 + EX28DRAFT_2330 0.52 +1.0
2,355,635 - EX28DRAFT_2330 0.52 -2.3
2,355,635 - EX28DRAFT_2330 0.52 -0.1
2,355,953 - EX28DRAFT_2330 0.80 +0.5
2,355,953 - EX28DRAFT_2330 0.80 -0.5
2,355,953 - EX28DRAFT_2330 0.80 -0.5
2,355,966 - EX28DRAFT_2330 0.82 -0.5
2,356,000 + EX28DRAFT_2330 0.85 +0.4
2,356,168 + +0.0
2,356,169 - +0.1
2,356,203 + +0.3
2,356,228 + +0.1
2,356,229 - +0.8
2,356,250 + -0.4
2,356,251 - -0.1
2,356,262 + +0.2
2,356,263 - -0.2
2,356,263 - -4.8
2,356,265 + -0.0
2,356,265 + -0.1
2,356,266 - -3.6
2,356,266 - -1.3
2,356,266 - -0.2
2,356,299 + -0.0
2,356,299 + -1.0
2,356,299 + -2.0
2,356,411 + -1.6
2,356,454 + EX28DRAFT_2331 0.12 -1.1
2,356,454 + EX28DRAFT_2331 0.12 -1.5
2,356,455 - EX28DRAFT_2331 0.12 -1.3
2,356,455 - EX28DRAFT_2331 0.12 -1.1
2,356,469 + EX28DRAFT_2331 0.13 -0.8
2,356,550 + EX28DRAFT_2331 0.20 -2.0
2,356,551 - EX28DRAFT_2331 0.20 -3.1
2,356,551 - EX28DRAFT_2331 0.20 -3.1
2,356,802 + EX28DRAFT_2331 0.41 -1.0
2,356,802 + EX28DRAFT_2331 0.41 -0.8
2,356,802 + EX28DRAFT_2331 0.41 -2.9
2,356,845 + EX28DRAFT_2331 0.44 -1.4
2,356,928 - EX28DRAFT_2331 0.51 -2.2
2,356,934 + EX28DRAFT_2331 0.51 +1.4
2,356,935 - EX28DRAFT_2331 0.52 -1.9
2,356,940 - EX28DRAFT_2331 0.52 -0.9
2,356,943 + EX28DRAFT_2331 0.52 -1.0
2,356,944 - EX28DRAFT_2331 0.52 -1.6
2,356,944 - EX28DRAFT_2331 0.52 -3.8
2,356,944 - EX28DRAFT_2331 0.52 -1.1
2,356,972 + EX28DRAFT_2331 0.55 -1.7
2,356,998 + EX28DRAFT_2331 0.57 -2.9
2,357,033 - EX28DRAFT_2331 0.60 -4.5
2,357,033 - EX28DRAFT_2331 0.60 -0.5
2,357,060 + EX28DRAFT_2331 0.62 -0.3
2,357,285 + EX28DRAFT_2331 0.80 -1.3
2,357,330 + EX28DRAFT_2331 0.84 -2.1
2,357,330 + EX28DRAFT_2331 0.84 -1.6
2,357,487 - -1.0
2,357,492 - -1.4
2,357,597 + -4.0
2,357,941 + -0.0
2,357,942 - -1.7
2,357,942 - -0.3
2,357,943 + +0.0
2,358,127 - EX28DRAFT_2333 0.22 -1.2

Or see this region's nucleotide sequence