Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2301

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2300 and EX28DRAFT_2301 are separated by 249 nucleotidesEX28DRAFT_2301 and EX28DRAFT_2302 are separated by 226 nucleotidesEX28DRAFT_2302 and EX28DRAFT_2303 are separated by 8 nucleotidesEX28DRAFT_2303 and EX28DRAFT_2304 are separated by 23 nucleotidesEX28DRAFT_2304 and EX28DRAFT_2305 are separated by 32 nucleotidesEX28DRAFT_2305 and EX28DRAFT_2306 are separated by 17 nucleotidesEX28DRAFT_2306 and EX28DRAFT_2307 are separated by 40 nucleotidesEX28DRAFT_2307 and EX28DRAFT_2308 are separated by 36 nucleotides EX28DRAFT_2300: EX28DRAFT_2300 - Predicted sugar phosphatases of the HAD superfamily, at 2,330,050 to 2,330,802 _2300 EX28DRAFT_2301: EX28DRAFT_2301 - asparagine synthase (glutamine-hydrolyzing), at 2,331,052 to 2,332,716 _2301 EX28DRAFT_2302: EX28DRAFT_2302 - tRNA, at 2,332,943 to 2,333,019 _2302 EX28DRAFT_2303: EX28DRAFT_2303 - tRNA, at 2,333,028 to 2,333,112 _2303 EX28DRAFT_2304: EX28DRAFT_2304 - tRNA, at 2,333,136 to 2,333,210 _2304 EX28DRAFT_2305: EX28DRAFT_2305 - tRNA, at 2,333,243 to 2,333,317 _2305 EX28DRAFT_2306: EX28DRAFT_2306 - tRNA, at 2,333,335 to 2,333,411 _2306 EX28DRAFT_2307: EX28DRAFT_2307 - tRNA, at 2,333,452 to 2,333,526 _2307 EX28DRAFT_2308: EX28DRAFT_2308 - tRNA, at 2,333,563 to 2,333,637 _2308 Position (kb) 2331 2332 2333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2330.059 kb on - strandat 2330.066 kb on + strandat 2330.066 kb on + strandat 2330.133 kb on - strand, within EX28DRAFT_2300at 2330.179 kb on + strand, within EX28DRAFT_2300at 2330.180 kb on - strand, within EX28DRAFT_2300at 2330.254 kb on + strand, within EX28DRAFT_2300at 2330.255 kb on - strand, within EX28DRAFT_2300at 2330.255 kb on - strand, within EX28DRAFT_2300at 2330.416 kb on - strand, within EX28DRAFT_2300at 2330.443 kb on + strand, within EX28DRAFT_2300at 2330.444 kb on - strand, within EX28DRAFT_2300at 2330.837 kb on + strandat 2330.839 kb on + strandat 2331.009 kb on - strandat 2331.009 kb on - strandat 2331.023 kb on - strandat 2331.023 kb on - strandat 2331.051 kb on + strandat 2331.051 kb on + strandat 2331.051 kb on + strandat 2331.051 kb on + strandat 2331.052 kb on - strandat 2331.052 kb on - strandat 2331.077 kb on - strandat 2331.082 kb on - strandat 2331.106 kb on - strandat 2331.207 kb on + strandat 2331.208 kb on - strandat 2331.241 kb on + strand, within EX28DRAFT_2301at 2331.242 kb on - strand, within EX28DRAFT_2301at 2331.242 kb on - strand, within EX28DRAFT_2301at 2331.242 kb on - strand, within EX28DRAFT_2301at 2331.287 kb on - strand, within EX28DRAFT_2301at 2331.287 kb on - strand, within EX28DRAFT_2301at 2331.287 kb on - strand, within EX28DRAFT_2301at 2331.371 kb on - strand, within EX28DRAFT_2301at 2331.452 kb on - strand, within EX28DRAFT_2301at 2331.490 kb on + strand, within EX28DRAFT_2301at 2331.491 kb on - strand, within EX28DRAFT_2301at 2331.491 kb on - strand, within EX28DRAFT_2301at 2331.491 kb on - strand, within EX28DRAFT_2301at 2331.491 kb on - strand, within EX28DRAFT_2301at 2331.520 kb on + strand, within EX28DRAFT_2301at 2331.622 kb on + strand, within EX28DRAFT_2301at 2331.622 kb on + strand, within EX28DRAFT_2301at 2331.623 kb on - strand, within EX28DRAFT_2301at 2331.623 kb on - strand, within EX28DRAFT_2301at 2331.647 kb on - strand, within EX28DRAFT_2301at 2331.991 kb on + strand, within EX28DRAFT_2301at 2331.991 kb on + strand, within EX28DRAFT_2301at 2331.991 kb on + strand, within EX28DRAFT_2301at 2331.992 kb on - strand, within EX28DRAFT_2301at 2332.006 kb on + strand, within EX28DRAFT_2301at 2332.006 kb on + strand, within EX28DRAFT_2301at 2332.129 kb on + strand, within EX28DRAFT_2301at 2332.152 kb on + strand, within EX28DRAFT_2301at 2332.197 kb on + strand, within EX28DRAFT_2301at 2332.197 kb on + strand, within EX28DRAFT_2301at 2332.197 kb on + strand, within EX28DRAFT_2301at 2332.197 kb on + strand, within EX28DRAFT_2301at 2332.198 kb on - strand, within EX28DRAFT_2301at 2332.198 kb on - strand, within EX28DRAFT_2301at 2332.198 kb on - strand, within EX28DRAFT_2301at 2332.369 kb on + strand, within EX28DRAFT_2301at 2332.428 kb on + strand, within EX28DRAFT_2301at 2332.537 kb on + strand, within EX28DRAFT_2301at 2332.538 kb on - strand, within EX28DRAFT_2301at 2332.538 kb on - strand, within EX28DRAFT_2301at 2332.714 kb on + strandat 2332.789 kb on - strandat 2332.791 kb on + strandat 2332.798 kb on + strandat 2332.799 kb on - strandat 2333.640 kb on + strandat 2333.640 kb on + strandat 2333.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,330,059 - -0.7
2,330,066 + -0.5
2,330,066 + -0.0
2,330,133 - EX28DRAFT_2300 0.11 -0.5
2,330,179 + EX28DRAFT_2300 0.17 -0.5
2,330,180 - EX28DRAFT_2300 0.17 -0.3
2,330,254 + EX28DRAFT_2300 0.27 -0.4
2,330,255 - EX28DRAFT_2300 0.27 -0.0
2,330,255 - EX28DRAFT_2300 0.27 -0.2
2,330,416 - EX28DRAFT_2300 0.49 -3.0
2,330,443 + EX28DRAFT_2300 0.52 -0.4
2,330,444 - EX28DRAFT_2300 0.52 -0.1
2,330,837 + -0.4
2,330,839 + +0.9
2,331,009 - -0.5
2,331,009 - +0.2
2,331,023 - -0.2
2,331,023 - -1.0
2,331,051 + +0.2
2,331,051 + +3.7
2,331,051 + +1.7
2,331,051 + -0.9
2,331,052 - +0.1
2,331,052 - -0.3
2,331,077 - -0.3
2,331,082 - -0.7
2,331,106 - +0.2
2,331,207 + +0.0
2,331,208 - +0.1
2,331,241 + EX28DRAFT_2301 0.11 +1.3
2,331,242 - EX28DRAFT_2301 0.11 -0.0
2,331,242 - EX28DRAFT_2301 0.11 +0.1
2,331,242 - EX28DRAFT_2301 0.11 -0.2
2,331,287 - EX28DRAFT_2301 0.14 +0.4
2,331,287 - EX28DRAFT_2301 0.14 +0.7
2,331,287 - EX28DRAFT_2301 0.14 +0.1
2,331,371 - EX28DRAFT_2301 0.19 +0.7
2,331,452 - EX28DRAFT_2301 0.24 -0.5
2,331,490 + EX28DRAFT_2301 0.26 +1.7
2,331,491 - EX28DRAFT_2301 0.26 +0.7
2,331,491 - EX28DRAFT_2301 0.26 -0.9
2,331,491 - EX28DRAFT_2301 0.26 +0.4
2,331,491 - EX28DRAFT_2301 0.26 +0.2
2,331,520 + EX28DRAFT_2301 0.28 +0.4
2,331,622 + EX28DRAFT_2301 0.34 +0.6
2,331,622 + EX28DRAFT_2301 0.34 +0.6
2,331,623 - EX28DRAFT_2301 0.34 +0.0
2,331,623 - EX28DRAFT_2301 0.34 +0.6
2,331,647 - EX28DRAFT_2301 0.36 +1.7
2,331,991 + EX28DRAFT_2301 0.56 +0.6
2,331,991 + EX28DRAFT_2301 0.56 +0.5
2,331,991 + EX28DRAFT_2301 0.56 +0.8
2,331,992 - EX28DRAFT_2301 0.56 -0.2
2,332,006 + EX28DRAFT_2301 0.57 +0.1
2,332,006 + EX28DRAFT_2301 0.57 +0.0
2,332,129 + EX28DRAFT_2301 0.65 +0.4
2,332,152 + EX28DRAFT_2301 0.66 +0.5
2,332,197 + EX28DRAFT_2301 0.69 +0.9
2,332,197 + EX28DRAFT_2301 0.69 +0.4
2,332,197 + EX28DRAFT_2301 0.69 +1.4
2,332,197 + EX28DRAFT_2301 0.69 +0.6
2,332,198 - EX28DRAFT_2301 0.69 -0.2
2,332,198 - EX28DRAFT_2301 0.69 +0.3
2,332,198 - EX28DRAFT_2301 0.69 +0.6
2,332,369 + EX28DRAFT_2301 0.79 +2.4
2,332,428 + EX28DRAFT_2301 0.83 +0.7
2,332,537 + EX28DRAFT_2301 0.89 +0.7
2,332,538 - EX28DRAFT_2301 0.89 +0.6
2,332,538 - EX28DRAFT_2301 0.89 +1.4
2,332,714 + +0.4
2,332,789 - -0.9
2,332,791 + -0.1
2,332,798 + +1.7
2,332,799 - +0.2
2,333,640 + -0.8
2,333,640 + +0.0
2,333,689 + -0.2

Or see this region's nucleotide sequence