Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2296 and EX28DRAFT_2297 are separated by 370 nucleotides EX28DRAFT_2297 and EX28DRAFT_2298 are separated by 56 nucleotides
EX28DRAFT_2296: EX28DRAFT_2296 - PTS system, N-acetylglucosamine-specific IIBC component, at 2,324,420 to 2,326,399
_2296
EX28DRAFT_2297: EX28DRAFT_2297 - glucosamine-6-phosphate isomerase, at 2,326,770 to 2,327,570
_2297
EX28DRAFT_2298: EX28DRAFT_2298 - N-acetylglucosamine-6-phosphate deacetylase, at 2,327,627 to 2,328,775
_2298
Position (kb)
2326
2327
2328 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.924 kb on + strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2325.925 kb on - strand, within EX28DRAFT_2296 at 2326.038 kb on + strand, within EX28DRAFT_2296 at 2326.038 kb on + strand, within EX28DRAFT_2296 at 2326.139 kb on - strand, within EX28DRAFT_2296 at 2326.139 kb on - strand, within EX28DRAFT_2296 at 2326.294 kb on + strand at 2326.318 kb on + strand at 2326.318 kb on + strand at 2326.322 kb on - strand at 2326.493 kb on + strand at 2326.511 kb on - strand at 2326.511 kb on - strand at 2326.514 kb on + strand at 2326.628 kb on + strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.705 kb on - strand at 2326.710 kb on + strand at 2326.710 kb on + strand at 2326.714 kb on + strand at 2326.715 kb on - strand at 2326.747 kb on + strand at 2326.748 kb on - strand at 2326.838 kb on + strand at 2326.937 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.990 kb on - strand, within EX28DRAFT_2297 at 2327.022 kb on + strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.034 kb on - strand, within EX28DRAFT_2297 at 2327.131 kb on - strand, within EX28DRAFT_2297 at 2327.182 kb on + strand, within EX28DRAFT_2297 at 2327.183 kb on - strand, within EX28DRAFT_2297 at 2327.319 kb on + strand, within EX28DRAFT_2297 at 2327.435 kb on + strand, within EX28DRAFT_2297 at 2327.529 kb on + strand at 2327.568 kb on + strand at 2327.627 kb on - strand at 2327.627 kb on - strand at 2327.630 kb on + strand at 2327.630 kb on + strand at 2327.654 kb on + strand at 2327.776 kb on - strand, within EX28DRAFT_2298 at 2327.800 kb on - strand, within EX28DRAFT_2298 at 2327.800 kb on - strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.910 kb on - strand, within EX28DRAFT_2298 at 2327.992 kb on + strand, within EX28DRAFT_2298 at 2328.065 kb on + strand, within EX28DRAFT_2298 at 2328.066 kb on - strand, within EX28DRAFT_2298 at 2328.073 kb on + strand, within EX28DRAFT_2298 at 2328.098 kb on + strand, within EX28DRAFT_2298 at 2328.098 kb on + strand, within EX28DRAFT_2298 at 2328.099 kb on - strand, within EX28DRAFT_2298 at 2328.293 kb on + strand, within EX28DRAFT_2298 at 2328.293 kb on + strand, within EX28DRAFT_2298 at 2328.350 kb on + strand, within EX28DRAFT_2298 at 2328.362 kb on - strand, within EX28DRAFT_2298 at 2328.375 kb on + strand, within EX28DRAFT_2298 at 2328.375 kb on + strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.504 kb on - strand, within EX28DRAFT_2298
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,325,924 + EX28DRAFT_2296 0.76 +0.1 2,325,924 + EX28DRAFT_2296 0.76 +0.0 2,325,924 + EX28DRAFT_2296 0.76 -0.2 2,325,924 + EX28DRAFT_2296 0.76 +0.2 2,325,924 + EX28DRAFT_2296 0.76 +2.1 2,325,925 - EX28DRAFT_2296 0.76 -0.2 2,325,925 - EX28DRAFT_2296 0.76 +0.1 2,325,925 - EX28DRAFT_2296 0.76 +0.9 2,326,038 + EX28DRAFT_2296 0.82 +3.7 2,326,038 + EX28DRAFT_2296 0.82 -1.0 2,326,139 - EX28DRAFT_2296 0.87 +0.3 2,326,139 - EX28DRAFT_2296 0.87 -1.7 2,326,294 + +0.5 2,326,318 + +0.0 2,326,318 + +0.4 2,326,322 - -0.2 2,326,493 + -0.5 2,326,511 - -0.7 2,326,511 - -0.7 2,326,514 + +1.1 2,326,628 + +1.1 2,326,629 - -1.3 2,326,629 - -1.1 2,326,629 - -1.1 2,326,705 - -0.8 2,326,710 + +1.0 2,326,710 + -0.4 2,326,714 + +0.1 2,326,715 - -0.9 2,326,747 + +0.1 2,326,748 - -0.8 2,326,838 + -0.3 2,326,937 + EX28DRAFT_2297 0.21 +0.5 2,326,989 + EX28DRAFT_2297 0.27 -0.3 2,326,989 + EX28DRAFT_2297 0.27 -1.2 2,326,990 - EX28DRAFT_2297 0.27 +2.0 2,327,022 + EX28DRAFT_2297 0.31 +0.9 2,327,023 - EX28DRAFT_2297 0.32 -0.3 2,327,023 - EX28DRAFT_2297 0.32 -1.4 2,327,034 - EX28DRAFT_2297 0.33 -0.7 2,327,131 - EX28DRAFT_2297 0.45 -1.9 2,327,182 + EX28DRAFT_2297 0.51 -0.9 2,327,183 - EX28DRAFT_2297 0.52 -1.8 2,327,319 + EX28DRAFT_2297 0.69 -0.1 2,327,435 + EX28DRAFT_2297 0.83 +0.0 2,327,529 + +0.3 2,327,568 + +0.7 2,327,627 - -0.2 2,327,627 - -2.0 2,327,630 + +1.2 2,327,630 + +0.2 2,327,654 + -0.3 2,327,776 - EX28DRAFT_2298 0.13 -1.0 2,327,800 - EX28DRAFT_2298 0.15 -0.1 2,327,800 - EX28DRAFT_2298 0.15 -0.9 2,327,909 + EX28DRAFT_2298 0.25 -2.0 2,327,909 + EX28DRAFT_2298 0.25 -0.4 2,327,909 + EX28DRAFT_2298 0.25 -0.2 2,327,910 - EX28DRAFT_2298 0.25 -1.8 2,327,992 + EX28DRAFT_2298 0.32 -1.7 2,328,065 + EX28DRAFT_2298 0.38 -0.1 2,328,066 - EX28DRAFT_2298 0.38 -1.2 2,328,073 + EX28DRAFT_2298 0.39 -0.6 2,328,098 + EX28DRAFT_2298 0.41 -1.3 2,328,098 + EX28DRAFT_2298 0.41 -0.5 2,328,099 - EX28DRAFT_2298 0.41 -0.9 2,328,293 + EX28DRAFT_2298 0.58 -1.0 2,328,293 + EX28DRAFT_2298 0.58 -0.5 2,328,350 + EX28DRAFT_2298 0.63 -0.2 2,328,362 - EX28DRAFT_2298 0.64 -4.0 2,328,375 + EX28DRAFT_2298 0.65 -0.3 2,328,375 + EX28DRAFT_2298 0.65 -0.6 2,328,376 - EX28DRAFT_2298 0.65 -2.0 2,328,376 - EX28DRAFT_2298 0.65 -0.2 2,328,376 - EX28DRAFT_2298 0.65 -0.6 2,328,504 - EX28DRAFT_2298 0.76 -1.2
Or see this region's nucleotide sequence