Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2286 and EX28DRAFT_2287 are separated by 104 nucleotides EX28DRAFT_2287 and EX28DRAFT_2288 are separated by 24 nucleotides EX28DRAFT_2288 and EX28DRAFT_2289 are separated by 183 nucleotides
EX28DRAFT_2286: EX28DRAFT_2286 - putrescine-ornithine antiporter, at 2,313,846 to 2,315,159
_2286
EX28DRAFT_2287: EX28DRAFT_2287 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 2,315,264 to 2,316,904
_2287
EX28DRAFT_2288: EX28DRAFT_2288 - negative regulator of replication initiation SeqA, at 2,316,929 to 2,317,477
_2288
EX28DRAFT_2289: EX28DRAFT_2289 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,317,661 to 2,318,434
_2289
Position (kb)
2315
2316
2317 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2314.314 kb on - strand, within EX28DRAFT_2286 at 2314.368 kb on + strand, within EX28DRAFT_2286 at 2314.551 kb on + strand, within EX28DRAFT_2286 at 2314.551 kb on + strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.552 kb on - strand, within EX28DRAFT_2286 at 2314.553 kb on + strand, within EX28DRAFT_2286 at 2314.739 kb on + strand, within EX28DRAFT_2286 at 2314.761 kb on + strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.762 kb on - strand, within EX28DRAFT_2286 at 2314.862 kb on + strand, within EX28DRAFT_2286 at 2314.929 kb on + strand, within EX28DRAFT_2286 at 2314.929 kb on + strand, within EX28DRAFT_2286 at 2314.930 kb on - strand, within EX28DRAFT_2286 at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.040 kb on + strand at 2315.041 kb on - strand at 2315.049 kb on + strand at 2315.049 kb on + strand at 2315.113 kb on - strand at 2315.157 kb on + strand at 2315.158 kb on - strand at 2315.197 kb on - strand at 2315.571 kb on + strand, within EX28DRAFT_2287 at 2315.608 kb on - strand, within EX28DRAFT_2287 at 2315.913 kb on + strand, within EX28DRAFT_2287 at 2315.917 kb on + strand, within EX28DRAFT_2287 at 2316.101 kb on - strand, within EX28DRAFT_2287 at 2316.153 kb on + strand, within EX28DRAFT_2287 at 2316.166 kb on + strand, within EX28DRAFT_2287 at 2316.390 kb on - strand, within EX28DRAFT_2287 at 2316.390 kb on - strand, within EX28DRAFT_2287 at 2316.435 kb on + strand, within EX28DRAFT_2287 at 2316.436 kb on - strand, within EX28DRAFT_2287 at 2316.436 kb on - strand, within EX28DRAFT_2287 at 2316.661 kb on - strand, within EX28DRAFT_2287 at 2316.775 kb on + strand at 2316.776 kb on - strand at 2316.825 kb on + strand at 2316.825 kb on + strand at 2316.826 kb on - strand at 2316.826 kb on - strand at 2316.931 kb on - strand at 2317.180 kb on - strand, within EX28DRAFT_2288 at 2317.438 kb on + strand at 2317.439 kb on - strand at 2317.439 kb on - strand at 2317.498 kb on + strand at 2317.523 kb on - strand at 2317.523 kb on - strand at 2317.524 kb on + strand at 2317.524 kb on + strand at 2317.524 kb on + strand at 2317.524 kb on + strand at 2317.525 kb on - strand at 2317.582 kb on - strand at 2317.639 kb on + strand at 2317.639 kb on + strand at 2317.639 kb on + strand at 2317.639 kb on + strand at 2317.639 kb on + strand at 2317.639 kb on + strand at 2317.640 kb on - strand at 2317.643 kb on + strand at 2317.643 kb on + strand at 2317.644 kb on - strand at 2317.705 kb on + strand at 2317.793 kb on - strand, within EX28DRAFT_2289 at 2317.797 kb on + strand, within EX28DRAFT_2289
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,314,314 - EX28DRAFT_2286 0.36 -0.0 2,314,368 + EX28DRAFT_2286 0.40 +1.7 2,314,551 + EX28DRAFT_2286 0.54 -0.3 2,314,551 + EX28DRAFT_2286 0.54 +0.4 2,314,552 - EX28DRAFT_2286 0.54 -1.4 2,314,552 - EX28DRAFT_2286 0.54 -1.8 2,314,552 - EX28DRAFT_2286 0.54 +0.1 2,314,553 + EX28DRAFT_2286 0.54 -1.4 2,314,739 + EX28DRAFT_2286 0.68 +0.7 2,314,761 + EX28DRAFT_2286 0.70 +1.1 2,314,762 - EX28DRAFT_2286 0.70 -0.1 2,314,762 - EX28DRAFT_2286 0.70 -0.1 2,314,762 - EX28DRAFT_2286 0.70 +0.5 2,314,862 + EX28DRAFT_2286 0.77 -0.1 2,314,929 + EX28DRAFT_2286 0.82 +0.5 2,314,929 + EX28DRAFT_2286 0.82 -0.7 2,314,930 - EX28DRAFT_2286 0.82 -1.2 2,315,040 + +1.3 2,315,040 + +0.1 2,315,040 + +1.2 2,315,040 + -0.5 2,315,041 - +0.1 2,315,049 + -0.2 2,315,049 + -0.1 2,315,113 - +0.5 2,315,157 + -0.3 2,315,158 - +0.1 2,315,197 - +1.1 2,315,571 + EX28DRAFT_2287 0.19 -1.8 2,315,608 - EX28DRAFT_2287 0.21 -1.7 2,315,913 + EX28DRAFT_2287 0.40 -2.8 2,315,917 + EX28DRAFT_2287 0.40 -1.5 2,316,101 - EX28DRAFT_2287 0.51 -1.7 2,316,153 + EX28DRAFT_2287 0.54 -1.0 2,316,166 + EX28DRAFT_2287 0.55 -1.8 2,316,390 - EX28DRAFT_2287 0.69 -0.7 2,316,390 - EX28DRAFT_2287 0.69 -1.0 2,316,435 + EX28DRAFT_2287 0.71 -3.5 2,316,436 - EX28DRAFT_2287 0.71 -0.7 2,316,436 - EX28DRAFT_2287 0.71 -0.6 2,316,661 - EX28DRAFT_2287 0.85 -1.3 2,316,775 + -0.6 2,316,776 - -0.3 2,316,825 + -1.5 2,316,825 + -1.0 2,316,826 - -1.0 2,316,826 - -2.0 2,316,931 - -0.6 2,317,180 - EX28DRAFT_2288 0.46 -1.8 2,317,438 + -4.3 2,317,439 - -2.4 2,317,439 - -1.3 2,317,498 + -2.2 2,317,523 - -0.3 2,317,523 - -0.9 2,317,524 + -1.2 2,317,524 + -3.3 2,317,524 + -4.3 2,317,524 + -2.1 2,317,525 - +0.7 2,317,582 - +0.2 2,317,639 + -0.3 2,317,639 + +0.3 2,317,639 + +1.0 2,317,639 + -0.9 2,317,639 + +0.5 2,317,639 + -0.2 2,317,640 - -0.7 2,317,643 + -0.5 2,317,643 + +0.4 2,317,644 - +0.7 2,317,705 + +0.2 2,317,793 - EX28DRAFT_2289 0.17 +0.0 2,317,797 + EX28DRAFT_2289 0.18 -0.3
Or see this region's nucleotide sequence