Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2287

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2286 and EX28DRAFT_2287 are separated by 104 nucleotidesEX28DRAFT_2287 and EX28DRAFT_2288 are separated by 24 nucleotidesEX28DRAFT_2288 and EX28DRAFT_2289 are separated by 183 nucleotides EX28DRAFT_2286: EX28DRAFT_2286 - putrescine-ornithine antiporter, at 2,313,846 to 2,315,159 _2286 EX28DRAFT_2287: EX28DRAFT_2287 - phosphoglucomutase, alpha-D-glucose phosphate-specific, at 2,315,264 to 2,316,904 _2287 EX28DRAFT_2288: EX28DRAFT_2288 - negative regulator of replication initiation SeqA, at 2,316,929 to 2,317,477 _2288 EX28DRAFT_2289: EX28DRAFT_2289 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,317,661 to 2,318,434 _2289 Position (kb) 2315 2316 2317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2314.314 kb on - strand, within EX28DRAFT_2286at 2314.368 kb on + strand, within EX28DRAFT_2286at 2314.551 kb on + strand, within EX28DRAFT_2286at 2314.551 kb on + strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.552 kb on - strand, within EX28DRAFT_2286at 2314.553 kb on + strand, within EX28DRAFT_2286at 2314.739 kb on + strand, within EX28DRAFT_2286at 2314.761 kb on + strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.762 kb on - strand, within EX28DRAFT_2286at 2314.862 kb on + strand, within EX28DRAFT_2286at 2314.929 kb on + strand, within EX28DRAFT_2286at 2314.929 kb on + strand, within EX28DRAFT_2286at 2314.930 kb on - strand, within EX28DRAFT_2286at 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.040 kb on + strandat 2315.041 kb on - strandat 2315.049 kb on + strandat 2315.049 kb on + strandat 2315.113 kb on - strandat 2315.157 kb on + strandat 2315.158 kb on - strandat 2315.197 kb on - strandat 2315.571 kb on + strand, within EX28DRAFT_2287at 2315.608 kb on - strand, within EX28DRAFT_2287at 2315.913 kb on + strand, within EX28DRAFT_2287at 2315.917 kb on + strand, within EX28DRAFT_2287at 2316.101 kb on - strand, within EX28DRAFT_2287at 2316.153 kb on + strand, within EX28DRAFT_2287at 2316.166 kb on + strand, within EX28DRAFT_2287at 2316.390 kb on - strand, within EX28DRAFT_2287at 2316.390 kb on - strand, within EX28DRAFT_2287at 2316.435 kb on + strand, within EX28DRAFT_2287at 2316.436 kb on - strand, within EX28DRAFT_2287at 2316.436 kb on - strand, within EX28DRAFT_2287at 2316.661 kb on - strand, within EX28DRAFT_2287at 2316.775 kb on + strandat 2316.776 kb on - strandat 2316.825 kb on + strandat 2316.825 kb on + strandat 2316.826 kb on - strandat 2316.826 kb on - strandat 2316.931 kb on - strandat 2317.180 kb on - strand, within EX28DRAFT_2288at 2317.438 kb on + strandat 2317.439 kb on - strandat 2317.439 kb on - strandat 2317.498 kb on + strandat 2317.523 kb on - strandat 2317.523 kb on - strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.524 kb on + strandat 2317.525 kb on - strandat 2317.582 kb on - strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.639 kb on + strandat 2317.640 kb on - strandat 2317.643 kb on + strandat 2317.643 kb on + strandat 2317.644 kb on - strandat 2317.705 kb on + strandat 2317.793 kb on - strand, within EX28DRAFT_2289at 2317.797 kb on + strand, within EX28DRAFT_2289

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,314,314 - EX28DRAFT_2286 0.36 -0.0
2,314,368 + EX28DRAFT_2286 0.40 +1.7
2,314,551 + EX28DRAFT_2286 0.54 -0.3
2,314,551 + EX28DRAFT_2286 0.54 +0.4
2,314,552 - EX28DRAFT_2286 0.54 -1.4
2,314,552 - EX28DRAFT_2286 0.54 -1.8
2,314,552 - EX28DRAFT_2286 0.54 +0.1
2,314,553 + EX28DRAFT_2286 0.54 -1.4
2,314,739 + EX28DRAFT_2286 0.68 +0.7
2,314,761 + EX28DRAFT_2286 0.70 +1.1
2,314,762 - EX28DRAFT_2286 0.70 -0.1
2,314,762 - EX28DRAFT_2286 0.70 -0.1
2,314,762 - EX28DRAFT_2286 0.70 +0.5
2,314,862 + EX28DRAFT_2286 0.77 -0.1
2,314,929 + EX28DRAFT_2286 0.82 +0.5
2,314,929 + EX28DRAFT_2286 0.82 -0.7
2,314,930 - EX28DRAFT_2286 0.82 -1.2
2,315,040 + +1.3
2,315,040 + +0.1
2,315,040 + +1.2
2,315,040 + -0.5
2,315,041 - +0.1
2,315,049 + -0.2
2,315,049 + -0.1
2,315,113 - +0.5
2,315,157 + -0.3
2,315,158 - +0.1
2,315,197 - +1.1
2,315,571 + EX28DRAFT_2287 0.19 -1.8
2,315,608 - EX28DRAFT_2287 0.21 -1.7
2,315,913 + EX28DRAFT_2287 0.40 -2.8
2,315,917 + EX28DRAFT_2287 0.40 -1.5
2,316,101 - EX28DRAFT_2287 0.51 -1.7
2,316,153 + EX28DRAFT_2287 0.54 -1.0
2,316,166 + EX28DRAFT_2287 0.55 -1.8
2,316,390 - EX28DRAFT_2287 0.69 -0.7
2,316,390 - EX28DRAFT_2287 0.69 -1.0
2,316,435 + EX28DRAFT_2287 0.71 -3.5
2,316,436 - EX28DRAFT_2287 0.71 -0.7
2,316,436 - EX28DRAFT_2287 0.71 -0.6
2,316,661 - EX28DRAFT_2287 0.85 -1.3
2,316,775 + -0.6
2,316,776 - -0.3
2,316,825 + -1.5
2,316,825 + -1.0
2,316,826 - -1.0
2,316,826 - -2.0
2,316,931 - -0.6
2,317,180 - EX28DRAFT_2288 0.46 -1.8
2,317,438 + -4.3
2,317,439 - -2.4
2,317,439 - -1.3
2,317,498 + -2.2
2,317,523 - -0.3
2,317,523 - -0.9
2,317,524 + -1.2
2,317,524 + -3.3
2,317,524 + -4.3
2,317,524 + -2.1
2,317,525 - +0.7
2,317,582 - +0.2
2,317,639 + -0.3
2,317,639 + +0.3
2,317,639 + +1.0
2,317,639 + -0.9
2,317,639 + +0.5
2,317,639 + -0.2
2,317,640 - -0.7
2,317,643 + -0.5
2,317,643 + +0.4
2,317,644 - +0.7
2,317,705 + +0.2
2,317,793 - EX28DRAFT_2289 0.17 +0.0
2,317,797 + EX28DRAFT_2289 0.18 -0.3

Or see this region's nucleotide sequence