Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2270 and EX28DRAFT_2271 are separated by 263 nucleotides EX28DRAFT_2271 and EX28DRAFT_2272 are separated by 1 nucleotides EX28DRAFT_2272 and EX28DRAFT_2273 are separated by 99 nucleotides EX28DRAFT_2273 and EX28DRAFT_2274 are separated by 19 nucleotides
EX28DRAFT_2270: EX28DRAFT_2270 - succinate dehydrogenase subunit C (EC 1.3.5.1), at 2,294,592 to 2,295,071
_2270
EX28DRAFT_2271: EX28DRAFT_2271 - hypothetical protein, at 2,295,335 to 2,295,634
_2271
EX28DRAFT_2272: EX28DRAFT_2272 - citrate synthase (EC 2.3.3.1), at 2,295,636 to 2,296,919
_2272
EX28DRAFT_2273: EX28DRAFT_2273 - Formamidopyrimidine-DNA glycosylase, at 2,297,019 to 2,297,810
_2273
EX28DRAFT_2274: EX28DRAFT_2274 - Uncharacterized proteins, homologs of lactam utilization protein B, at 2,297,830 to 2,298,570
_2274
Position (kb)
2295
2296
2297 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2294.690 kb on - strand, within EX28DRAFT_2270 at 2295.107 kb on + strand at 2295.193 kb on - strand at 2295.196 kb on + strand at 2295.196 kb on + strand at 2295.197 kb on - strand at 2295.197 kb on - strand at 2295.298 kb on - strand at 2295.321 kb on - strand at 2295.322 kb on + strand at 2295.322 kb on + strand at 2295.322 kb on + strand at 2295.322 kb on + strand at 2295.323 kb on - strand at 2295.323 kb on - strand at 2295.367 kb on + strand, within EX28DRAFT_2271 at 2295.368 kb on - strand, within EX28DRAFT_2271 at 2295.371 kb on + strand, within EX28DRAFT_2271 at 2295.411 kb on - strand, within EX28DRAFT_2271 at 2295.413 kb on + strand, within EX28DRAFT_2271 at 2295.414 kb on - strand, within EX28DRAFT_2271 at 2295.422 kb on - strand, within EX28DRAFT_2271 at 2295.422 kb on - strand, within EX28DRAFT_2271 at 2295.506 kb on - strand, within EX28DRAFT_2271 at 2295.552 kb on + strand, within EX28DRAFT_2271 at 2295.552 kb on + strand, within EX28DRAFT_2271 at 2295.573 kb on + strand, within EX28DRAFT_2271 at 2295.608 kb on + strand at 2295.633 kb on + strand at 2295.644 kb on + strand at 2295.644 kb on + strand at 2295.645 kb on - strand at 2295.697 kb on + strand at 2295.697 kb on + strand at 2295.698 kb on - strand at 2295.722 kb on + strand at 2295.776 kb on + strand, within EX28DRAFT_2272 at 2295.810 kb on + strand, within EX28DRAFT_2272 at 2295.897 kb on + strand, within EX28DRAFT_2272 at 2295.897 kb on + strand, within EX28DRAFT_2272 at 2295.898 kb on - strand, within EX28DRAFT_2272 at 2295.898 kb on - strand, within EX28DRAFT_2272 at 2295.898 kb on - strand, within EX28DRAFT_2272 at 2295.898 kb on - strand, within EX28DRAFT_2272 at 2295.937 kb on - strand, within EX28DRAFT_2272 at 2296.072 kb on - strand, within EX28DRAFT_2272 at 2296.095 kb on - strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.170 kb on + strand, within EX28DRAFT_2272 at 2296.171 kb on - strand, within EX28DRAFT_2272 at 2296.171 kb on - strand, within EX28DRAFT_2272 at 2296.194 kb on + strand, within EX28DRAFT_2272 at 2296.215 kb on + strand, within EX28DRAFT_2272 at 2296.216 kb on - strand, within EX28DRAFT_2272 at 2296.729 kb on - strand, within EX28DRAFT_2272 at 2296.872 kb on + strand at 2296.873 kb on - strand at 2296.873 kb on - strand at 2296.908 kb on - strand at 2296.908 kb on - strand at 2296.910 kb on + strand at 2297.020 kb on + strand at 2297.021 kb on - strand at 2297.066 kb on + strand at 2297.067 kb on - strand at 2297.127 kb on - strand, within EX28DRAFT_2273 at 2297.255 kb on + strand, within EX28DRAFT_2273 at 2297.255 kb on + strand, within EX28DRAFT_2273 at 2297.256 kb on - strand, within EX28DRAFT_2273 at 2297.302 kb on + strand, within EX28DRAFT_2273 at 2297.302 kb on + strand, within EX28DRAFT_2273 at 2297.306 kb on + strand, within EX28DRAFT_2273 at 2297.306 kb on + strand, within EX28DRAFT_2273 at 2297.500 kb on + strand, within EX28DRAFT_2273 at 2297.597 kb on - strand, within EX28DRAFT_2273 at 2297.612 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.614 kb on + strand, within EX28DRAFT_2273 at 2297.615 kb on - strand, within EX28DRAFT_2273 at 2297.615 kb on - strand, within EX28DRAFT_2273 at 2297.616 kb on + strand, within EX28DRAFT_2273 at 2297.616 kb on + strand, within EX28DRAFT_2273 at 2297.617 kb on - strand, within EX28DRAFT_2273 at 2297.617 kb on - strand, within EX28DRAFT_2273 at 2297.667 kb on + strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.668 kb on - strand, within EX28DRAFT_2273 at 2297.712 kb on + strand, within EX28DRAFT_2273 at 2297.713 kb on - strand, within EX28DRAFT_2273 at 2297.918 kb on - strand, within EX28DRAFT_2274
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,294,690 - EX28DRAFT_2270 0.20 +1.9 2,295,107 + +1.9 2,295,193 - -0.3 2,295,196 + -0.6 2,295,196 + -0.2 2,295,197 - +0.6 2,295,197 - +0.5 2,295,298 - -0.3 2,295,321 - -0.1 2,295,322 + -1.2 2,295,322 + -0.2 2,295,322 + +0.5 2,295,322 + +0.3 2,295,323 - -0.5 2,295,323 - -0.9 2,295,367 + EX28DRAFT_2271 0.11 +0.1 2,295,368 - EX28DRAFT_2271 0.11 +0.2 2,295,371 + EX28DRAFT_2271 0.12 -0.6 2,295,411 - EX28DRAFT_2271 0.25 +0.1 2,295,413 + EX28DRAFT_2271 0.26 -0.5 2,295,414 - EX28DRAFT_2271 0.26 -3.4 2,295,422 - EX28DRAFT_2271 0.29 -0.9 2,295,422 - EX28DRAFT_2271 0.29 -1.5 2,295,506 - EX28DRAFT_2271 0.57 -2.6 2,295,552 + EX28DRAFT_2271 0.72 -0.8 2,295,552 + EX28DRAFT_2271 0.72 -2.0 2,295,573 + EX28DRAFT_2271 0.79 -1.9 2,295,608 + -3.7 2,295,633 + -3.7 2,295,644 + -2.3 2,295,644 + +1.0 2,295,645 - -3.4 2,295,697 + -2.2 2,295,697 + -3.7 2,295,698 - -1.6 2,295,722 + -1.0 2,295,776 + EX28DRAFT_2272 0.11 -3.4 2,295,810 + EX28DRAFT_2272 0.14 -0.8 2,295,897 + EX28DRAFT_2272 0.20 -3.1 2,295,897 + EX28DRAFT_2272 0.20 -3.7 2,295,898 - EX28DRAFT_2272 0.20 -4.1 2,295,898 - EX28DRAFT_2272 0.20 -1.6 2,295,898 - EX28DRAFT_2272 0.20 -3.1 2,295,898 - EX28DRAFT_2272 0.20 -2.9 2,295,937 - EX28DRAFT_2272 0.23 -3.0 2,296,072 - EX28DRAFT_2272 0.34 -1.9 2,296,095 - EX28DRAFT_2272 0.36 -1.0 2,296,170 + EX28DRAFT_2272 0.42 -2.0 2,296,170 + EX28DRAFT_2272 0.42 -2.6 2,296,170 + EX28DRAFT_2272 0.42 -4.1 2,296,171 - EX28DRAFT_2272 0.42 -2.3 2,296,171 - EX28DRAFT_2272 0.42 -1.0 2,296,194 + EX28DRAFT_2272 0.43 -3.0 2,296,215 + EX28DRAFT_2272 0.45 -5.2 2,296,216 - EX28DRAFT_2272 0.45 -1.8 2,296,729 - EX28DRAFT_2272 0.85 -1.1 2,296,872 + -2.0 2,296,873 - -3.2 2,296,873 - -1.3 2,296,908 - -0.5 2,296,908 - -0.3 2,296,910 + -1.6 2,297,020 + -0.4 2,297,021 - +0.4 2,297,066 + +0.7 2,297,067 - -0.4 2,297,127 - EX28DRAFT_2273 0.14 +1.1 2,297,255 + EX28DRAFT_2273 0.30 -1.3 2,297,255 + EX28DRAFT_2273 0.30 +0.1 2,297,256 - EX28DRAFT_2273 0.30 -1.0 2,297,302 + EX28DRAFT_2273 0.36 -0.5 2,297,302 + EX28DRAFT_2273 0.36 -0.0 2,297,306 + EX28DRAFT_2273 0.36 -0.2 2,297,306 + EX28DRAFT_2273 0.36 -1.6 2,297,500 + EX28DRAFT_2273 0.61 +1.6 2,297,597 - EX28DRAFT_2273 0.73 -0.5 2,297,612 + EX28DRAFT_2273 0.75 +0.4 2,297,614 + EX28DRAFT_2273 0.75 -0.3 2,297,614 + EX28DRAFT_2273 0.75 -0.6 2,297,614 + EX28DRAFT_2273 0.75 +0.3 2,297,615 - EX28DRAFT_2273 0.75 -1.2 2,297,615 - EX28DRAFT_2273 0.75 +0.6 2,297,616 + EX28DRAFT_2273 0.75 +0.1 2,297,616 + EX28DRAFT_2273 0.75 -3.1 2,297,617 - EX28DRAFT_2273 0.76 -0.3 2,297,617 - EX28DRAFT_2273 0.76 +0.8 2,297,667 + EX28DRAFT_2273 0.82 +0.8 2,297,668 - EX28DRAFT_2273 0.82 -0.9 2,297,668 - EX28DRAFT_2273 0.82 -1.1 2,297,668 - EX28DRAFT_2273 0.82 +0.1 2,297,712 + EX28DRAFT_2273 0.88 -0.1 2,297,713 - EX28DRAFT_2273 0.88 +0.1 2,297,918 - EX28DRAFT_2274 0.12 +1.5
Or see this region's nucleotide sequence