Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2266 and EX28DRAFT_2267 are separated by 266 nucleotides EX28DRAFT_2267 and EX28DRAFT_2268 are separated by 15 nucleotides
EX28DRAFT_2266: EX28DRAFT_2266 - 2-oxoglutarate dehydrogenase, E1 component, at 2,288,679 to 2,291,486
_2266
EX28DRAFT_2267: EX28DRAFT_2267 - succinate dehydrogenase and fumarate reductase iron-sulfur protein, at 2,291,753 to 2,292,469
_2267
EX28DRAFT_2268: EX28DRAFT_2268 - succinate dehydrogenase subunit A (EC 1.3.5.1), at 2,292,485 to 2,294,251
_2268
Position (kb)
2291
2292
2293 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2291.507 kb on + strand at 2291.508 kb on - strand at 2291.549 kb on + strand at 2291.549 kb on + strand at 2291.550 kb on - strand at 2291.599 kb on + strand at 2291.600 kb on - strand at 2291.621 kb on - strand at 2291.755 kb on - strand at 2291.782 kb on + strand at 2291.861 kb on + strand, within EX28DRAFT_2267 at 2291.862 kb on - strand, within EX28DRAFT_2267 at 2292.022 kb on + strand, within EX28DRAFT_2267 at 2292.022 kb on + strand, within EX28DRAFT_2267 at 2292.031 kb on - strand, within EX28DRAFT_2267 at 2292.328 kb on + strand, within EX28DRAFT_2267 at 2292.353 kb on + strand, within EX28DRAFT_2267 at 2292.486 kb on + strand at 2292.493 kb on + strand at 2292.701 kb on - strand, within EX28DRAFT_2268 at 2292.854 kb on - strand, within EX28DRAFT_2268 at 2292.854 kb on - strand, within EX28DRAFT_2268 at 2292.854 kb on - strand, within EX28DRAFT_2268 at 2292.854 kb on - strand, within EX28DRAFT_2268 at 2292.854 kb on - strand, within EX28DRAFT_2268 at 2293.070 kb on + strand, within EX28DRAFT_2268 at 2293.189 kb on - strand, within EX28DRAFT_2268 at 2293.425 kb on + strand, within EX28DRAFT_2268
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,291,507 + -1.7 2,291,508 - -0.4 2,291,549 + -3.6 2,291,549 + -3.5 2,291,550 - -1.8 2,291,599 + -3.8 2,291,600 - -0.3 2,291,621 - -1.8 2,291,755 - +0.5 2,291,782 + +0.9 2,291,861 + EX28DRAFT_2267 0.15 -0.9 2,291,862 - EX28DRAFT_2267 0.15 +2.8 2,292,022 + EX28DRAFT_2267 0.38 -1.4 2,292,022 + EX28DRAFT_2267 0.38 -0.2 2,292,031 - EX28DRAFT_2267 0.39 +2.1 2,292,328 + EX28DRAFT_2267 0.80 +1.0 2,292,353 + EX28DRAFT_2267 0.84 +1.9 2,292,486 + +0.4 2,292,493 + +2.4 2,292,701 - EX28DRAFT_2268 0.12 +2.5 2,292,854 - EX28DRAFT_2268 0.21 +1.7 2,292,854 - EX28DRAFT_2268 0.21 +3.9 2,292,854 - EX28DRAFT_2268 0.21 +2.1 2,292,854 - EX28DRAFT_2268 0.21 +2.4 2,292,854 - EX28DRAFT_2268 0.21 +3.0 2,293,070 + EX28DRAFT_2268 0.33 +2.6 2,293,189 - EX28DRAFT_2268 0.40 +2.8 2,293,425 + EX28DRAFT_2268 0.53 +2.2
Or see this region's nucleotide sequence