Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2261 and EX28DRAFT_2262 are separated by 170 nucleotides EX28DRAFT_2262 and EX28DRAFT_2263 are separated by 82 nucleotides EX28DRAFT_2263 and EX28DRAFT_2264 overlap by 1 nucleotides
EX28DRAFT_2261: EX28DRAFT_2261 - PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIA component/PTS system, fructose subfamily, IIC component, at 2,282,439 to 2,284,355
_2261
EX28DRAFT_2262: EX28DRAFT_2262 - Transcriptional regulators, at 2,284,526 to 2,285,242
_2262
EX28DRAFT_2263: EX28DRAFT_2263 - succinyl-CoA synthetase, alpha subunit, at 2,285,325 to 2,286,194
_2263
EX28DRAFT_2264: EX28DRAFT_2264 - succinyl-CoA synthetase, beta subunit, at 2,286,194 to 2,287,360
_2264
Position (kb)
2285
2286
2287 Strain fitness (log2 ratio)
-2
-1
0
1 at 2284.370 kb on + strand at 2284.370 kb on + strand at 2284.436 kb on - strand at 2284.491 kb on + strand at 2284.492 kb on - strand at 2284.492 kb on - strand at 2284.510 kb on + strand at 2284.511 kb on - strand at 2284.511 kb on - strand at 2284.555 kb on - strand at 2284.727 kb on + strand, within EX28DRAFT_2262 at 2284.752 kb on - strand, within EX28DRAFT_2262 at 2284.761 kb on - strand, within EX28DRAFT_2262 at 2284.921 kb on - strand, within EX28DRAFT_2262 at 2285.010 kb on - strand, within EX28DRAFT_2262 at 2285.208 kb on - strand at 2285.289 kb on - strand at 2285.326 kb on + strand at 2285.326 kb on + strand at 2285.327 kb on - strand at 2285.330 kb on + strand at 2285.331 kb on - strand at 2285.331 kb on - strand at 2285.331 kb on - strand at 2285.498 kb on - strand, within EX28DRAFT_2263 at 2285.533 kb on + strand, within EX28DRAFT_2263 at 2285.720 kb on - strand, within EX28DRAFT_2263 at 2285.814 kb on - strand, within EX28DRAFT_2263 at 2285.981 kb on - strand, within EX28DRAFT_2263 at 2286.012 kb on + strand, within EX28DRAFT_2263 at 2286.180 kb on - strand at 2286.195 kb on + strand at 2286.196 kb on - strand at 2286.196 kb on - strand at 2286.196 kb on - strand at 2286.196 kb on - strand at 2286.259 kb on + strand at 2286.308 kb on - strand at 2286.368 kb on - strand, within EX28DRAFT_2264 at 2286.495 kb on - strand, within EX28DRAFT_2264 at 2286.495 kb on - strand, within EX28DRAFT_2264 at 2286.577 kb on + strand, within EX28DRAFT_2264 at 2286.607 kb on - strand, within EX28DRAFT_2264 at 2287.012 kb on + strand, within EX28DRAFT_2264 at 2287.171 kb on + strand, within EX28DRAFT_2264
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,284,370 + +0.8 2,284,370 + +0.5 2,284,436 - +0.3 2,284,491 + +0.5 2,284,492 - +0.6 2,284,492 - +1.5 2,284,510 + +0.6 2,284,511 - +0.0 2,284,511 - -0.4 2,284,555 - +0.3 2,284,727 + EX28DRAFT_2262 0.28 -0.7 2,284,752 - EX28DRAFT_2262 0.32 +0.6 2,284,761 - EX28DRAFT_2262 0.33 -0.2 2,284,921 - EX28DRAFT_2262 0.55 +0.1 2,285,010 - EX28DRAFT_2262 0.68 -0.2 2,285,208 - +0.2 2,285,289 - -0.9 2,285,326 + +0.7 2,285,326 + +1.7 2,285,327 - +1.0 2,285,330 + -1.5 2,285,331 - -2.2 2,285,331 - -0.3 2,285,331 - +0.4 2,285,498 - EX28DRAFT_2263 0.20 -0.1 2,285,533 + EX28DRAFT_2263 0.24 -0.5 2,285,720 - EX28DRAFT_2263 0.45 +0.8 2,285,814 - EX28DRAFT_2263 0.56 -0.2 2,285,981 - EX28DRAFT_2263 0.75 +1.0 2,286,012 + EX28DRAFT_2263 0.79 +1.2 2,286,180 - -0.7 2,286,195 + -0.4 2,286,196 - -1.0 2,286,196 - +1.7 2,286,196 - +0.6 2,286,196 - -0.4 2,286,259 + -0.4 2,286,308 - -0.8 2,286,368 - EX28DRAFT_2264 0.15 +0.3 2,286,495 - EX28DRAFT_2264 0.26 +0.9 2,286,495 - EX28DRAFT_2264 0.26 -0.4 2,286,577 + EX28DRAFT_2264 0.33 +1.7 2,286,607 - EX28DRAFT_2264 0.35 -0.7 2,287,012 + EX28DRAFT_2264 0.70 -0.4 2,287,171 + EX28DRAFT_2264 0.84 +0.8
Or see this region's nucleotide sequence