Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2217

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2216 and EX28DRAFT_2217 are separated by 68 nucleotidesEX28DRAFT_2217 and EX28DRAFT_2218 are separated by 48 nucleotidesEX28DRAFT_2218 and EX28DRAFT_2219 are separated by 103 nucleotides EX28DRAFT_2216: EX28DRAFT_2216 - biotin synthase (EC 2.8.1.6), at 2,239,159 to 2,240,199 _2216 EX28DRAFT_2217: EX28DRAFT_2217 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 2,240,268 to 2,241,575 _2217 EX28DRAFT_2218: EX28DRAFT_2218 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 2,241,624 to 2,242,100 _2218 EX28DRAFT_2219: EX28DRAFT_2219 - histidine ammonia-lyase (EC 4.3.1.3), at 2,242,204 to 2,243,724 _2219 Position (kb) 2240 2241 2242Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2239.344 kb on - strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.751 kb on + strand, within EX28DRAFT_2216at 2239.752 kb on - strand, within EX28DRAFT_2216at 2239.752 kb on - strand, within EX28DRAFT_2216at 2239.755 kb on - strand, within EX28DRAFT_2216at 2239.815 kb on + strand, within EX28DRAFT_2216at 2239.816 kb on - strand, within EX28DRAFT_2216at 2239.816 kb on - strand, within EX28DRAFT_2216at 2239.865 kb on + strand, within EX28DRAFT_2216at 2240.024 kb on + strand, within EX28DRAFT_2216at 2240.223 kb on + strandat 2240.242 kb on + strandat 2240.321 kb on + strandat 2240.321 kb on + strandat 2240.322 kb on - strandat 2240.334 kb on + strandat 2240.334 kb on + strandat 2240.334 kb on + strandat 2240.335 kb on - strandat 2240.461 kb on - strand, within EX28DRAFT_2217at 2240.557 kb on + strand, within EX28DRAFT_2217at 2240.557 kb on + strand, within EX28DRAFT_2217at 2240.662 kb on - strand, within EX28DRAFT_2217at 2240.716 kb on - strand, within EX28DRAFT_2217at 2240.716 kb on - strand, within EX28DRAFT_2217at 2240.953 kb on - strand, within EX28DRAFT_2217at 2241.197 kb on + strand, within EX28DRAFT_2217at 2241.198 kb on - strand, within EX28DRAFT_2217at 2241.215 kb on + strand, within EX28DRAFT_2217at 2241.473 kb on + strandat 2241.473 kb on + strandat 2241.474 kb on - strandat 2241.474 kb on - strandat 2241.474 kb on - strandat 2241.474 kb on - strandat 2241.478 kb on - strandat 2241.478 kb on - strandat 2241.500 kb on + strandat 2241.573 kb on + strandat 2241.573 kb on + strandat 2241.573 kb on + strandat 2241.573 kb on + strandat 2241.573 kb on + strandat 2241.573 kb on + strandat 2241.574 kb on - strandat 2241.580 kb on - strandat 2241.586 kb on + strandat 2241.587 kb on - strandat 2241.587 kb on - strandat 2241.710 kb on + strand, within EX28DRAFT_2218at 2241.710 kb on + strand, within EX28DRAFT_2218at 2241.766 kb on + strand, within EX28DRAFT_2218at 2241.921 kb on - strand, within EX28DRAFT_2218at 2241.969 kb on + strand, within EX28DRAFT_2218at 2241.970 kb on - strand, within EX28DRAFT_2218at 2241.971 kb on + strand, within EX28DRAFT_2218at 2241.971 kb on + strand, within EX28DRAFT_2218at 2241.971 kb on + strand, within EX28DRAFT_2218at 2242.046 kb on + strand, within EX28DRAFT_2218at 2242.046 kb on + strand, within EX28DRAFT_2218at 2242.092 kb on + strandat 2242.092 kb on + strandat 2242.093 kb on - strandat 2242.093 kb on - strandat 2242.098 kb on + strandat 2242.099 kb on - strandat 2242.099 kb on - strandat 2242.102 kb on - strandat 2242.219 kb on + strandat 2242.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,239,344 - EX28DRAFT_2216 0.18 -2.5
2,239,751 + EX28DRAFT_2216 0.57 -2.9
2,239,751 + EX28DRAFT_2216 0.57 -0.9
2,239,751 + EX28DRAFT_2216 0.57 -2.0
2,239,752 - EX28DRAFT_2216 0.57 -0.2
2,239,752 - EX28DRAFT_2216 0.57 -4.1
2,239,755 - EX28DRAFT_2216 0.57 -1.3
2,239,815 + EX28DRAFT_2216 0.63 -0.9
2,239,816 - EX28DRAFT_2216 0.63 -3.2
2,239,816 - EX28DRAFT_2216 0.63 -3.5
2,239,865 + EX28DRAFT_2216 0.68 -3.4
2,240,024 + EX28DRAFT_2216 0.83 -3.8
2,240,223 + -5.0
2,240,242 + -2.6
2,240,321 + -2.0
2,240,321 + -1.7
2,240,322 - -1.6
2,240,334 + -2.3
2,240,334 + -1.1
2,240,334 + -3.7
2,240,335 - -1.1
2,240,461 - EX28DRAFT_2217 0.15 -0.7
2,240,557 + EX28DRAFT_2217 0.22 -2.3
2,240,557 + EX28DRAFT_2217 0.22 -0.9
2,240,662 - EX28DRAFT_2217 0.30 -4.4
2,240,716 - EX28DRAFT_2217 0.34 -1.5
2,240,716 - EX28DRAFT_2217 0.34 -1.6
2,240,953 - EX28DRAFT_2217 0.52 -1.5
2,241,197 + EX28DRAFT_2217 0.71 -0.9
2,241,198 - EX28DRAFT_2217 0.71 -1.9
2,241,215 + EX28DRAFT_2217 0.72 -1.9
2,241,473 + -3.1
2,241,473 + -0.6
2,241,474 - -0.8
2,241,474 - -1.5
2,241,474 - -0.7
2,241,474 - -1.6
2,241,478 - -1.2
2,241,478 - -1.2
2,241,500 + -2.2
2,241,573 + -0.9
2,241,573 + -0.5
2,241,573 + +0.4
2,241,573 + -0.1
2,241,573 + +0.2
2,241,573 + +0.0
2,241,574 - +1.1
2,241,580 - +0.1
2,241,586 + -0.5
2,241,587 - +0.6
2,241,587 - +2.7
2,241,710 + EX28DRAFT_2218 0.18 -2.0
2,241,710 + EX28DRAFT_2218 0.18 -0.7
2,241,766 + EX28DRAFT_2218 0.30 +0.7
2,241,921 - EX28DRAFT_2218 0.62 -0.5
2,241,969 + EX28DRAFT_2218 0.72 +0.3
2,241,970 - EX28DRAFT_2218 0.73 +0.9
2,241,971 + EX28DRAFT_2218 0.73 -1.8
2,241,971 + EX28DRAFT_2218 0.73 -0.0
2,241,971 + EX28DRAFT_2218 0.73 -2.3
2,242,046 + EX28DRAFT_2218 0.88 +0.4
2,242,046 + EX28DRAFT_2218 0.88 -2.6
2,242,092 + -2.6
2,242,092 + +1.2
2,242,093 - -1.2
2,242,093 - +0.0
2,242,098 + +0.3
2,242,099 - +0.3
2,242,099 - +0.4
2,242,102 - -0.1
2,242,219 + -0.0
2,242,220 - +0.1

Or see this region's nucleotide sequence