Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2199 and EX28DRAFT_2200 overlap by 39 nucleotides EX28DRAFT_2200 and EX28DRAFT_2201 are separated by 133 nucleotides EX28DRAFT_2201 and EX28DRAFT_2202 overlap by 4 nucleotides
EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742
_2199
EX28DRAFT_2200: EX28DRAFT_2200 - Putative inner membrane protein YbhQ, at 2,224,704 to 2,225,114
_2200
EX28DRAFT_2201: EX28DRAFT_2201 - Metal-dependent hydrolase, at 2,225,248 to 2,226,009
_2201
EX28DRAFT_2202: EX28DRAFT_2202 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,226,006 to 2,227,244
_2202
Position (kb)
2225
2226
2227 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2224.508 kb on + strand, within EX28DRAFT_2199 at 2224.537 kb on - strand, within EX28DRAFT_2199 at 2224.608 kb on - strand, within EX28DRAFT_2199 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2225.061 kb on + strand, within EX28DRAFT_2200 at 2225.214 kb on - strand at 2225.247 kb on + strand at 2225.247 kb on + strand at 2225.248 kb on - strand at 2225.248 kb on - strand at 2225.277 kb on + strand at 2225.301 kb on + strand at 2225.455 kb on + strand, within EX28DRAFT_2201 at 2225.908 kb on + strand, within EX28DRAFT_2201 at 2225.909 kb on - strand, within EX28DRAFT_2201 at 2225.909 kb on - strand, within EX28DRAFT_2201 at 2226.006 kb on - strand at 2226.126 kb on - strand at 2226.288 kb on + strand, within EX28DRAFT_2202 at 2226.289 kb on - strand, within EX28DRAFT_2202 at 2226.289 kb on - strand, within EX28DRAFT_2202 at 2226.321 kb on - strand, within EX28DRAFT_2202 at 2226.392 kb on + strand, within EX28DRAFT_2202 at 2226.410 kb on + strand, within EX28DRAFT_2202 at 2226.410 kb on + strand, within EX28DRAFT_2202 at 2226.410 kb on + strand, within EX28DRAFT_2202 at 2226.410 kb on + strand, within EX28DRAFT_2202 at 2226.410 kb on + strand, within EX28DRAFT_2202 at 2226.411 kb on - strand, within EX28DRAFT_2202 at 2226.411 kb on - strand, within EX28DRAFT_2202 at 2226.411 kb on - strand, within EX28DRAFT_2202 at 2226.411 kb on - strand, within EX28DRAFT_2202 at 2226.445 kb on - strand, within EX28DRAFT_2202 at 2226.484 kb on + strand, within EX28DRAFT_2202 at 2226.639 kb on + strand, within EX28DRAFT_2202 at 2226.816 kb on + strand, within EX28DRAFT_2202 at 2226.816 kb on + strand, within EX28DRAFT_2202 at 2226.817 kb on - strand, within EX28DRAFT_2202 at 2226.817 kb on - strand, within EX28DRAFT_2202 at 2226.817 kb on - strand, within EX28DRAFT_2202 at 2226.817 kb on - strand, within EX28DRAFT_2202 at 2226.818 kb on + strand, within EX28DRAFT_2202 at 2226.818 kb on + strand, within EX28DRAFT_2202 at 2226.819 kb on - strand, within EX28DRAFT_2202 at 2226.819 kb on - strand, within EX28DRAFT_2202 at 2226.822 kb on + strand, within EX28DRAFT_2202 at 2226.822 kb on + strand, within EX28DRAFT_2202 at 2226.822 kb on + strand, within EX28DRAFT_2202 at 2226.823 kb on - strand, within EX28DRAFT_2202 at 2226.823 kb on - strand, within EX28DRAFT_2202 at 2226.849 kb on + strand, within EX28DRAFT_2202 at 2226.923 kb on + strand, within EX28DRAFT_2202
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,224,508 + EX28DRAFT_2199 0.79 +0.5 2,224,537 - EX28DRAFT_2199 0.81 +0.3 2,224,608 - EX28DRAFT_2199 0.88 +0.3 2,224,874 - EX28DRAFT_2200 0.41 -0.7 2,224,874 - EX28DRAFT_2200 0.41 +0.7 2,224,941 + EX28DRAFT_2200 0.58 -0.7 2,224,941 + EX28DRAFT_2200 0.58 +0.2 2,225,061 + EX28DRAFT_2200 0.87 -0.1 2,225,214 - +0.2 2,225,247 + +0.1 2,225,247 + -0.2 2,225,248 - -1.2 2,225,248 - +2.4 2,225,277 + -0.5 2,225,301 + -3.3 2,225,455 + EX28DRAFT_2201 0.27 +0.3 2,225,908 + EX28DRAFT_2201 0.87 +0.4 2,225,909 - EX28DRAFT_2201 0.87 +0.4 2,225,909 - EX28DRAFT_2201 0.87 +0.3 2,226,006 - +2.0 2,226,126 - -1.0 2,226,288 + EX28DRAFT_2202 0.23 +0.3 2,226,289 - EX28DRAFT_2202 0.23 -0.5 2,226,289 - EX28DRAFT_2202 0.23 -2.8 2,226,321 - EX28DRAFT_2202 0.25 -1.8 2,226,392 + EX28DRAFT_2202 0.31 +0.3 2,226,410 + EX28DRAFT_2202 0.33 +0.5 2,226,410 + EX28DRAFT_2202 0.33 -0.1 2,226,410 + EX28DRAFT_2202 0.33 +0.2 2,226,410 + EX28DRAFT_2202 0.33 -0.1 2,226,410 + EX28DRAFT_2202 0.33 -0.4 2,226,411 - EX28DRAFT_2202 0.33 -0.3 2,226,411 - EX28DRAFT_2202 0.33 -0.1 2,226,411 - EX28DRAFT_2202 0.33 +0.6 2,226,411 - EX28DRAFT_2202 0.33 +0.1 2,226,445 - EX28DRAFT_2202 0.35 -0.2 2,226,484 + EX28DRAFT_2202 0.39 +0.7 2,226,639 + EX28DRAFT_2202 0.51 -1.3 2,226,816 + EX28DRAFT_2202 0.65 +0.1 2,226,816 + EX28DRAFT_2202 0.65 +0.6 2,226,817 - EX28DRAFT_2202 0.65 -0.6 2,226,817 - EX28DRAFT_2202 0.65 +0.0 2,226,817 - EX28DRAFT_2202 0.65 -1.1 2,226,817 - EX28DRAFT_2202 0.65 -0.2 2,226,818 + EX28DRAFT_2202 0.66 -0.3 2,226,818 + EX28DRAFT_2202 0.66 +0.1 2,226,819 - EX28DRAFT_2202 0.66 +0.0 2,226,819 - EX28DRAFT_2202 0.66 +1.0 2,226,822 + EX28DRAFT_2202 0.66 -2.0 2,226,822 + EX28DRAFT_2202 0.66 +0.3 2,226,822 + EX28DRAFT_2202 0.66 -0.2 2,226,823 - EX28DRAFT_2202 0.66 +0.4 2,226,823 - EX28DRAFT_2202 0.66 -1.1 2,226,849 + EX28DRAFT_2202 0.68 -0.1 2,226,923 + EX28DRAFT_2202 0.74 -1.4
Or see this region's nucleotide sequence