Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2201

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2199 and EX28DRAFT_2200 overlap by 39 nucleotidesEX28DRAFT_2200 and EX28DRAFT_2201 are separated by 133 nucleotidesEX28DRAFT_2201 and EX28DRAFT_2202 overlap by 4 nucleotides EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742 _2199 EX28DRAFT_2200: EX28DRAFT_2200 - Putative inner membrane protein YbhQ, at 2,224,704 to 2,225,114 _2200 EX28DRAFT_2201: EX28DRAFT_2201 - Metal-dependent hydrolase, at 2,225,248 to 2,226,009 _2201 EX28DRAFT_2202: EX28DRAFT_2202 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,226,006 to 2,227,244 _2202 Position (kb) 2225 2226 2227Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2224.508 kb on + strand, within EX28DRAFT_2199at 2224.537 kb on - strand, within EX28DRAFT_2199at 2224.608 kb on - strand, within EX28DRAFT_2199at 2224.874 kb on - strand, within EX28DRAFT_2200at 2224.874 kb on - strand, within EX28DRAFT_2200at 2224.941 kb on + strand, within EX28DRAFT_2200at 2224.941 kb on + strand, within EX28DRAFT_2200at 2225.061 kb on + strand, within EX28DRAFT_2200at 2225.214 kb on - strandat 2225.247 kb on + strandat 2225.247 kb on + strandat 2225.248 kb on - strandat 2225.248 kb on - strandat 2225.277 kb on + strandat 2225.301 kb on + strandat 2225.455 kb on + strand, within EX28DRAFT_2201at 2225.908 kb on + strand, within EX28DRAFT_2201at 2225.909 kb on - strand, within EX28DRAFT_2201at 2225.909 kb on - strand, within EX28DRAFT_2201at 2226.006 kb on - strandat 2226.126 kb on - strandat 2226.288 kb on + strand, within EX28DRAFT_2202at 2226.289 kb on - strand, within EX28DRAFT_2202at 2226.289 kb on - strand, within EX28DRAFT_2202at 2226.321 kb on - strand, within EX28DRAFT_2202at 2226.392 kb on + strand, within EX28DRAFT_2202at 2226.410 kb on + strand, within EX28DRAFT_2202at 2226.410 kb on + strand, within EX28DRAFT_2202at 2226.410 kb on + strand, within EX28DRAFT_2202at 2226.410 kb on + strand, within EX28DRAFT_2202at 2226.410 kb on + strand, within EX28DRAFT_2202at 2226.411 kb on - strand, within EX28DRAFT_2202at 2226.411 kb on - strand, within EX28DRAFT_2202at 2226.411 kb on - strand, within EX28DRAFT_2202at 2226.411 kb on - strand, within EX28DRAFT_2202at 2226.445 kb on - strand, within EX28DRAFT_2202at 2226.484 kb on + strand, within EX28DRAFT_2202at 2226.639 kb on + strand, within EX28DRAFT_2202at 2226.816 kb on + strand, within EX28DRAFT_2202at 2226.816 kb on + strand, within EX28DRAFT_2202at 2226.817 kb on - strand, within EX28DRAFT_2202at 2226.817 kb on - strand, within EX28DRAFT_2202at 2226.817 kb on - strand, within EX28DRAFT_2202at 2226.817 kb on - strand, within EX28DRAFT_2202at 2226.818 kb on + strand, within EX28DRAFT_2202at 2226.818 kb on + strand, within EX28DRAFT_2202at 2226.819 kb on - strand, within EX28DRAFT_2202at 2226.819 kb on - strand, within EX28DRAFT_2202at 2226.822 kb on + strand, within EX28DRAFT_2202at 2226.822 kb on + strand, within EX28DRAFT_2202at 2226.822 kb on + strand, within EX28DRAFT_2202at 2226.823 kb on - strand, within EX28DRAFT_2202at 2226.823 kb on - strand, within EX28DRAFT_2202at 2226.849 kb on + strand, within EX28DRAFT_2202at 2226.923 kb on + strand, within EX28DRAFT_2202

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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2,224,508 + EX28DRAFT_2199 0.79 +0.5
2,224,537 - EX28DRAFT_2199 0.81 +0.3
2,224,608 - EX28DRAFT_2199 0.88 +0.3
2,224,874 - EX28DRAFT_2200 0.41 -0.7
2,224,874 - EX28DRAFT_2200 0.41 +0.7
2,224,941 + EX28DRAFT_2200 0.58 -0.7
2,224,941 + EX28DRAFT_2200 0.58 +0.2
2,225,061 + EX28DRAFT_2200 0.87 -0.1
2,225,214 - +0.2
2,225,247 + +0.1
2,225,247 + -0.2
2,225,248 - -1.2
2,225,248 - +2.4
2,225,277 + -0.5
2,225,301 + -3.3
2,225,455 + EX28DRAFT_2201 0.27 +0.3
2,225,908 + EX28DRAFT_2201 0.87 +0.4
2,225,909 - EX28DRAFT_2201 0.87 +0.4
2,225,909 - EX28DRAFT_2201 0.87 +0.3
2,226,006 - +2.0
2,226,126 - -1.0
2,226,288 + EX28DRAFT_2202 0.23 +0.3
2,226,289 - EX28DRAFT_2202 0.23 -0.5
2,226,289 - EX28DRAFT_2202 0.23 -2.8
2,226,321 - EX28DRAFT_2202 0.25 -1.8
2,226,392 + EX28DRAFT_2202 0.31 +0.3
2,226,410 + EX28DRAFT_2202 0.33 +0.5
2,226,410 + EX28DRAFT_2202 0.33 -0.1
2,226,410 + EX28DRAFT_2202 0.33 +0.2
2,226,410 + EX28DRAFT_2202 0.33 -0.1
2,226,410 + EX28DRAFT_2202 0.33 -0.4
2,226,411 - EX28DRAFT_2202 0.33 -0.3
2,226,411 - EX28DRAFT_2202 0.33 -0.1
2,226,411 - EX28DRAFT_2202 0.33 +0.6
2,226,411 - EX28DRAFT_2202 0.33 +0.1
2,226,445 - EX28DRAFT_2202 0.35 -0.2
2,226,484 + EX28DRAFT_2202 0.39 +0.7
2,226,639 + EX28DRAFT_2202 0.51 -1.3
2,226,816 + EX28DRAFT_2202 0.65 +0.1
2,226,816 + EX28DRAFT_2202 0.65 +0.6
2,226,817 - EX28DRAFT_2202 0.65 -0.6
2,226,817 - EX28DRAFT_2202 0.65 +0.0
2,226,817 - EX28DRAFT_2202 0.65 -1.1
2,226,817 - EX28DRAFT_2202 0.65 -0.2
2,226,818 + EX28DRAFT_2202 0.66 -0.3
2,226,818 + EX28DRAFT_2202 0.66 +0.1
2,226,819 - EX28DRAFT_2202 0.66 +0.0
2,226,819 - EX28DRAFT_2202 0.66 +1.0
2,226,822 + EX28DRAFT_2202 0.66 -2.0
2,226,822 + EX28DRAFT_2202 0.66 +0.3
2,226,822 + EX28DRAFT_2202 0.66 -0.2
2,226,823 - EX28DRAFT_2202 0.66 +0.4
2,226,823 - EX28DRAFT_2202 0.66 -1.1
2,226,849 + EX28DRAFT_2202 0.68 -0.1
2,226,923 + EX28DRAFT_2202 0.74 -1.4

Or see this region's nucleotide sequence