Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2198 and EX28DRAFT_2199 are separated by 9 nucleotides EX28DRAFT_2199 and EX28DRAFT_2200 overlap by 39 nucleotides EX28DRAFT_2200 and EX28DRAFT_2201 are separated by 133 nucleotides
EX28DRAFT_2198: EX28DRAFT_2198 - ABC-type multidrug transport system, permease component, at 2,222,493 to 2,223,626
_2198
EX28DRAFT_2199: EX28DRAFT_2199 - ABC-type multidrug transport system, permease component, at 2,223,636 to 2,224,742
_2199
EX28DRAFT_2200: EX28DRAFT_2200 - Putative inner membrane protein YbhQ, at 2,224,704 to 2,225,114
_2200
EX28DRAFT_2201: EX28DRAFT_2201 - Metal-dependent hydrolase, at 2,225,248 to 2,226,009
_2201
Position (kb)
2223
2224
2225 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2222.846 kb on + strand, within EX28DRAFT_2198 at 2222.847 kb on - strand, within EX28DRAFT_2198 at 2222.870 kb on + strand, within EX28DRAFT_2198 at 2223.039 kb on - strand, within EX28DRAFT_2198 at 2223.062 kb on + strand, within EX28DRAFT_2198 at 2223.192 kb on + strand, within EX28DRAFT_2198 at 2223.195 kb on + strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.196 kb on - strand, within EX28DRAFT_2198 at 2223.308 kb on - strand, within EX28DRAFT_2198 at 2223.441 kb on - strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.468 kb on + strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.469 kb on - strand, within EX28DRAFT_2198 at 2223.473 kb on + strand, within EX28DRAFT_2198 at 2223.562 kb on + strand at 2223.563 kb on - strand at 2224.007 kb on + strand, within EX28DRAFT_2199 at 2224.038 kb on + strand, within EX28DRAFT_2199 at 2224.039 kb on - strand, within EX28DRAFT_2199 at 2224.128 kb on + strand, within EX28DRAFT_2199 at 2224.129 kb on - strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.146 kb on + strand, within EX28DRAFT_2199 at 2224.147 kb on - strand, within EX28DRAFT_2199 at 2224.508 kb on + strand, within EX28DRAFT_2199 at 2224.537 kb on - strand, within EX28DRAFT_2199 at 2224.608 kb on - strand, within EX28DRAFT_2199 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.874 kb on - strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2224.941 kb on + strand, within EX28DRAFT_2200 at 2225.061 kb on + strand, within EX28DRAFT_2200 at 2225.214 kb on - strand at 2225.247 kb on + strand at 2225.247 kb on + strand at 2225.248 kb on - strand at 2225.248 kb on - strand at 2225.277 kb on + strand at 2225.301 kb on + strand at 2225.455 kb on + strand, within EX28DRAFT_2201
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 2,222,846 + EX28DRAFT_2198 0.31 -0.4 2,222,847 - EX28DRAFT_2198 0.31 -0.4 2,222,870 + EX28DRAFT_2198 0.33 -1.0 2,223,039 - EX28DRAFT_2198 0.48 -0.1 2,223,062 + EX28DRAFT_2198 0.50 -0.1 2,223,192 + EX28DRAFT_2198 0.62 -0.2 2,223,195 + EX28DRAFT_2198 0.62 -1.0 2,223,196 - EX28DRAFT_2198 0.62 +0.6 2,223,196 - EX28DRAFT_2198 0.62 -0.2 2,223,196 - EX28DRAFT_2198 0.62 -0.3 2,223,196 - EX28DRAFT_2198 0.62 -0.3 2,223,308 - EX28DRAFT_2198 0.72 +1.3 2,223,441 - EX28DRAFT_2198 0.84 +0.6 2,223,468 + EX28DRAFT_2198 0.86 -0.3 2,223,468 + EX28DRAFT_2198 0.86 +0.5 2,223,468 + EX28DRAFT_2198 0.86 +1.4 2,223,468 + EX28DRAFT_2198 0.86 -0.8 2,223,468 + EX28DRAFT_2198 0.86 +0.2 2,223,469 - EX28DRAFT_2198 0.86 -1.4 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 -0.6 2,223,469 - EX28DRAFT_2198 0.86 -0.4 2,223,469 - EX28DRAFT_2198 0.86 -0.0 2,223,469 - EX28DRAFT_2198 0.86 +0.3 2,223,469 - EX28DRAFT_2198 0.86 +0.8 2,223,469 - EX28DRAFT_2198 0.86 +0.7 2,223,473 + EX28DRAFT_2198 0.86 -0.0 2,223,562 + -0.1 2,223,563 - -0.7 2,224,007 + EX28DRAFT_2199 0.34 +1.2 2,224,038 + EX28DRAFT_2199 0.36 +0.8 2,224,039 - EX28DRAFT_2199 0.36 -0.0 2,224,128 + EX28DRAFT_2199 0.44 -0.9 2,224,129 - EX28DRAFT_2199 0.45 -0.3 2,224,146 + EX28DRAFT_2199 0.46 +3.1 2,224,146 + EX28DRAFT_2199 0.46 -0.2 2,224,147 - EX28DRAFT_2199 0.46 +0.6 2,224,508 + EX28DRAFT_2199 0.79 +0.5 2,224,537 - EX28DRAFT_2199 0.81 +0.3 2,224,608 - EX28DRAFT_2199 0.88 +0.3 2,224,874 - EX28DRAFT_2200 0.41 -0.7 2,224,874 - EX28DRAFT_2200 0.41 +0.7 2,224,941 + EX28DRAFT_2200 0.58 -0.7 2,224,941 + EX28DRAFT_2200 0.58 +0.2 2,225,061 + EX28DRAFT_2200 0.87 -0.1 2,225,214 - +0.2 2,225,247 + +0.1 2,225,247 + -0.2 2,225,248 - -1.2 2,225,248 - +2.4 2,225,277 + -0.5 2,225,301 + -3.3 2,225,455 + EX28DRAFT_2201 0.27 +0.3
Or see this region's nucleotide sequence